Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCATAGGCACAGGTTACGATCTGTCTGTCACCACCTTCTCCCCAGATGGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattccactgcctcccacctcctattgtgtttttgcttcaagccttcacttatttccttttctctgttctatgtaatcttattggtttggttaatgccatggtatttgtgaacag

Basic information

species Zea mays
transcript GRMZM2G008623_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008623_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 2
GCAGCATAGGCACAGGTTACGATCTGTCTGTCACCACCTTCTCCCCAGATGGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattccactgcctcccacctcctattgtgtttttgcttcaagccttcacttatttccttttctctgttctatgtaatcttattggtttggttaatgccatggtatttgtgaacag
|||||||||||||||| ||||||||||| || ||||||||||| || |||||||| ||||||||||| || ||||| || ||||| ||||||||||||||||| | ||  |||||  |||           | | ||| ||||    |||    ||   | | |||  |  | | || |||  | |         | | |   |  ||||||| |||||
GCAGCATAGGCACAGGATACGATCTGTCCGTTACCACCTTCTCTCCGGATGGTCGCGTCTTCCAGGTTGAGTATGCCACGAAGGCTGTCGACAACAGCGGgttcggtttaactgctcccc-----------tttctttccttc----cttttgctaccgcttcttcctttctgtgtgcaattatgtaa-------tgacgttctaatatttgttaacag

upper sequence: GRMZM2G008623_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 1
GCAGCATAGGCACAGGTTACGATCTGTCTGTCACCACCTTCTCCCCAGATGGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattccactgcc-tcccacctcctattgt-gtttttgcttcaagccttcacttatttccttttctctgttctatgtaatcttattggtt-tggttaatgccatggtatttgtgaacag----------------------------------------------------
| ||||| || |||||||||||||| || |||||||| |||||||| ||||| || || |||||| |||| |||||  | || |||||||||||||||||||| |     |      |      |  |||| |  || ||  |  |    |  | |  |    ||     ||    |   | | |  ||  |  |  | | |    |  | ||| | ||  |                                                    
GTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtacttatcattattattattattattattattattattatacttttaaattcgtggttttaaaattgaaaaaaagagtttatttaataattatgagtatgttttttttttttaaatgattttgtaatttttgtattggtagtgatcttagatttgaaactttgttgcag

upper sequence: GRMZM2G008623_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 1
GCAGCATAGGCACAGGTTACGATCTGTCTGTCACCACCTTCTCCCCAGATGGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattccactgcctcccacctcctattgtgtttttgcttcaagcct---tcacttatt---tccttttctctgttctatgtaatcttattggtttggtta-atgccatggtatttgtgaacag---------------
||||||| || |||||||||||||| || |||||||| |||||||| ||||| ||||| |||||| |||| |||||| |||| |||||||| ||||||||||| |       |   |         |  ||  |||    || || |     |   |||||   |  || |   | || | ||| || || |   |||  ||  ||    | ||  |  |  |                  
GCAGCATCGGAACAGGTTACGATCTCTCCGTCACCACTTTCTCCCCCGATGGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactttttttttttttttaattcgtggttttgaaattgaaacggaaatagtttattgaataattatgatttttttttgtgattttgtatttttttttgtatttggtagtgatcctagatttgaaactttgttgtag

upper sequence: GRMZM2G008623_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 1
GCAGCATAGGCACAGGTTACGATCTGTCTGTCACCACCTTCTCCCCAGATGGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattccactgcctcccacctcctattgtgtttttgcttcaagccttcacttatttccttttctctgtt-ctatgtaatcttattggtttggttaatgccatggtatttgtgaacag
|||||||||| || || |||||||| ||||||||||| ||||| || ||||| || || |||||| ||||||| ||  |||| || ||||| |||||||||||| ||||         ||| || || || | |||||  ||      || || ||  || | |  |  ||| ||| | ||       || | ||  ||    | || |  |   ||   
GCAGCATAGGAACTGGATACGATCTCTCTGTCACCACATTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgtta-attct--------ccatcttctcttttttttttttttt---ttttaacctaaatcatctgtttggttgctaagaaa-------gggtgggagaaatgaacggaacctcaaaatt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22819364|gb|BU499454.1|BU499454
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|91049728|gb|EB160146.1|EB160146
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211461819|gb|FL074147.1|FL074147
EST:     GGTCGCGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211461826|gb|FL074154.1|FL074154
EST:     GGTCGCGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAATGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAA-GTGCAAAGATGGCATTGTCCTG
EST: gi|22819427|gb|BU499517.1|BU499517
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGAT
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGAT
EST: gi|93284362|gb|EB676626.1|EB676626
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|22819362|gb|BU499452.1|BU499452
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211064278|gb|FK983495.1|FK983495
EST:     GGTCGCGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211461823|gb|FL074151.1|FL074151
EST:     GGTCGCGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211064280|gb|FK983497.1|FK983497
EST:     GGTCGCGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|78106193|gb|DV524611.1|DV524611
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|22819430|gb|BU499520.1|BU499520
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|71431491|gb|DR812541.1|DR812541
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|21843523|gb|BQ704104.1|BQ704104
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|148931430|gb|EC874390.2|EC874390
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211064283|gb|FK983500.1|FK983500
EST:     GGTCGCGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|50333782|gb|CO528908.1|CO528908
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211064277|gb|FK983494.1|FK983494
EST:     GGTCGCGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|26456267|gb|CA827850.1|CA827850
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|148981882|gb|EE027956.2|EE027956
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211464348|gb|FL074165.1|FL074165
EST:     GGTCGCGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|5566922|gb|AI881833.1|AI881833
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|19770380|gb|BQ035101.1|BQ035101
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|149084419|gb|EE173874.2|EE173874
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|148949932|gb|EC895439.2|EC895439
EST:     GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattcc ... ttgtgaacagGACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG