1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTTTTCCCTGGTACAAATGACAGAATCATCATGGTTTCTGGACTGTTTGATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAGgtaaagcatttttatttttcaagcgactgattcaggattgatgattgatgttctccagttattttaccag
species | Zea mays |
transcript | GRMZM2G008410_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAG GGTGAAGAATTCAACGAAGEST: gi|22491641|gb|BU051564.1|BU051564
genomic: ATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAGgtaaagcatt ... attttaccagGGTGAAGAATTCAACGAAG
EST: GCTGATTCTTGAGAAACTGTTGGCTGAG GGTGAAGAATTCAACGAAGCAGAAGCTAAGACCTAAAGTTAGACTTGTAGTEST: gi|19350719|gb|BM895251.1|BM895251
genomic: GCTGATTCTTGAGAAACTGTTGGCTGAGgtaaagcatt ... attttaccagGGTGAAGAATTCAACGAAGCAGAAGCT-AGACCTAAAGTTAGACTTGTAGT
EST: ATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAG GGTGAAGAATTCAACGAAGCEST: gi|20300623|gb|BQ163566.1|BQ163566
genomic: ATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAGgtaaagcatt ... attttaccagGGTGAAGAATTCAACGAAGC
EST: GCTGATTCTTGAGAAACTGTTGGCTGAG GGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTTEST: gi|87151880|gb|DY396669.1|DY396669
genomic: GCTGATTCTTGAGAAACTGTTGGCTGAGgtaaagcatt ... attttaccagGGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTT
EST: GCTGATTCTTGAGAAACTGTTGGCTGAG GGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTTEST: gi|9028619|gb|BE238659.1|BE238659
genomic: GCTGATTCTTGAGAAACTGTTGGCTGAGgtaaagcatt ... attttaccagGGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTT
EST: ATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAG GGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTTEST: gi|19770173|gb|BQ034894.1|BQ034894
genomic: ATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAGgtaaagcatt ... attttaccagGGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTT
EST: ATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAG GGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTTEST: gi|60394388|gb|DN227258.1|DN227258
genomic: ATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAGgtaaagcatt ... attttaccagGGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTT
EST: TGTTGGCTGAG GGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTTEST: gi|148995842|gb|EE035078.2|EE035078
genomic: TGTTGGCTGAGgtaaagcatt ... attttaccagGGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTT
EST: ATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAG GGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTTEST: gi|78114793|gb|DV533181.1|DV533181
genomic: ATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAGgtaaagcatt ... attttaccagGGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTT
EST: ATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAG GGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTT
genomic: ATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAGgtaaagcatt ... attttaccagGGTGAAGAATTCAACGAAGCAGAAGCTAGACCTAAAGTTAGACTTGTAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTCCCTGGTACAAATGACAGAATCATCATGGTTTCTGGACTGTTTGATGAAGTAATGAAGGCCATGGAGCTGATTCTTGAGAAACTGTTGGCTGAGgtaaagcatttttatttttcaagcgactgattcaggattgatgattgatgttctccagttattttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT