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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGTGTTCTACAAAGGAAGAGCTCCTCGGGGTGAGAAGACGAACTGGGTCATGCATGAGTATCGCCTGCACTCCAAATCACTCCCCAAATCTAACAAGgtacacgcacgcacgtgcttacggaccttacggtacatatatacatacatatttcacgaaattgcttaatgttgatcagcggaattaatcatggtcctagctagaatggatagacaaattcatgaagatgttttttggttatctgtatggcactggcgcgcag

Basic information

species Zea mays
transcript GRMZM2G008374_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008374_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g32260.2 (Oryza sativa), 5'ss of exon 3
CCTGGTGTTCTACAAAGGAAGAGCTCCTCGGGGTGAGAAGACGAACTGGGTCATGCATGAGTATCGCCTGCACTCCAAATCACTCCCCAAATCTAACAAGgtacacgcacgcacgtgcttacggaccttacggtacatatatacatacatatttcacgaaattgcttaatgttgatcagcggaattaatcatggtcctagctagaatggatagacaaatt-catgaagatgttttttggttatctgtatggcactggcgcgcag
||| ||||||||||||||||| |||||  | |||||||| || || ||||||||||||||||| || || |||||||||||| |||||||||| ||||||||| ||  |  ||  || |     |  ||      ||    || | ||||  ||||| |||||   |  | || ||        ||  |  || | |     |   ||  || ||  |||  ||||                                      
CCTAGTGTTCTACAAAGGAAGGGCTCCAAGAGGTGAGAAAACCAATTGGGTCATGCATGAGTACCGACTCCACTCCAAATCAATCCCCAAATCAAACAAGgtaaaca-attcaattgatagt--attttcaaactcactactatacacatgcttcactaaatttacttgtattaattgaaatgttt--ttgtgatgc--atcattttgtttatactcattatatgacag-----------------------------------

upper sequence: GRMZM2G008374_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT2G24430.1 (Arabidopsis thaliana), 5'ss of exon 3
CCTGGTGTTCTACAAAGGAAGAGCTCCTCGGGGTGAGAAGACGAACTGGGTCATGCATGAGTATCGCCTGCACTCCAAATCACTCCCCAAATCTAACAAGgtacacgcacgcacgtgcttacggaccttacgg---tacat-atat-acatacatatttcacgaa--attgcttaatgttgatca------gcggaattaatcatggtcctagctagaatggatagacaaattcatgaagatgttttttggttatct--gtatggcactggcgcgcag
  |||| || |||| |||| |||||||||| || ||||||||    |||||||||||||||||||| || |||||||| ||       | | |   ||||||||||       | |  |||     ||  |     ||||| || | |    |||  || |   |  | |  | ||||||  |        | || |||| |  |  ||  |   |||||  ||| | ||| |||  ||      |||   || ||    | |  ||       ||||
TTTGGTCTTTTACAGAGGACGAGCTCCTCGTGGGGAGAAGACTTGTTGGGTCATGCATGAGTATCGACTTCACTCCAAGTCCTCATATAGAACCTCCAAGgtacactattttcctttgttattcttctaccaaatatacattatgtcatggtcatgatttaaatacgagtcttgaatgtttttttttttttgtgggattagtgtt--tcacaagaagaat--atacataaactcaacaattctcatttcatttttcatgatgtaacatgtaaatgcag

upper sequence: GRMZM2G008374_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv04s0008g02710.t01 (Vitis vinifera), 5'ss of exon 2
CCTGGTGTTCTACAAAGGAAGAGCTCCTCGGGGTGAGAAGACGAACTGGGTCATGCATGAGTATCGCCTGCACTCCAAATCACTCCCCAAATCTAACAAGgtacacgcacgcacgtgcttacggaccttacggtacatatatacatacatatttcacgaaattgcttaatgttgatcagcgg--aattaatcatggtcctagctagaatggatagacaaattcatgaagatgttttttggttatctgtatggcactggcgcgcag
| |||||||||||| ||||||||||||| | || || || || || ||||||||||| || |||||| | || || |||||   |  || | ||| |||||||             | |||    |||||     ||||  ||||| ||| | |    ||     |||  |||    |  |   || | |||  |||  |    |  ||  |||   |                                               
CTTGGTGTTCTACAGAGGAAGAGCTCCTAGAGGCGAAAAAACCAATTGGGTCATGCACGAATATCGCATCCATTCAAAATCCGCCTTCAGAACTAGCAAGgtaa------------gattat---ccttat----catacttacatgcatgtcttcaaaagaaaattagggttaggtaaagttcaactcatctaggtgttgaaaaatataaatatgaag----------------------------------------------