1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCTGCGGATTGGAAGTTTGCAGCAGAGCAGTTTGTCAAGAGATTGCCGGGAAAAGTCTACGTGCATCgtgagtgttcgtactttgtactagttgcgctcttccatttgaaacggctgcaatttattatcgcaattcgcaaaccttgaattggttccttgttccttta...
species | Zea mays |
transcript | GRMZM2G008242_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCAGCAGAGCAGTTTGTCAAGAGATTGCCGGGAAAAGTCTACGTGCATC GTAGTCAGAGCAATTATTCAAAATTAACATATGACGGAGTTGACTTAATGGEST: gi|211294510|gb|FL387886.1|FL387886
genomic: TGCAGCAGAGCAGTTTGTCAAGAGATTGCCGGGAAAAGTCTACGTGCATCgtgagtgttc ... tttaatgcagGTAGTCAGAGCAATTATTCAAAATTAACATATGACGGAGTTGACTTAATGG
EST: TGCAGCAGAGCAGTTTGTCAAAAGATTGCCGGGAAAAGTCTACGTGCATC GTAGTCAGAGCAATTATTCAAAATTAACATATGACGGAGTTGACTTAATGGEST: gi|101390894|gb|EB817382.1|EB817382
genomic: TGCAGCAGAGCAGTTTGTCAAGAGATTGCCGGGAAAAGTCTACGTGCATCgtgagtgttc ... tttaatgcagGTAGTCAGAGCAATTATTCAAAATTAACATATGACGGAGTTGACTTAATGG
EST: TGCAGCAGAGCAGTTTGTCAAGAGATTGCCGGGAAAAGTCTACGTGCATC GTAGTCAGAGCAATTATTCAAAATTAACATATGACGGAGTTGACTTAATEST: gi|71433735|gb|DR814785.1|DR814785
genomic: TGCAGCAGAGCAGTTTGTCAAGAGATTGCCGGGAAAAGTCTACGTGCATCgtgagtgttc ... tttaatgcagGTAGTCAGAGCAATTATTCAAAATTAACATATGACGGAGTTGACTTAAT
EST: TGCAGCAGAGCAGTTTGTCAAGAGATTGCCGG-AAAAGTCTACGTGCATC GTAGTCAGAGCAATTATTCAAAATTAACATATGACGGAGTTGACTTAATGG
genomic: TGCAGCAGAGCAGTTTGTCAAGAGATTGCCGGGAAAAGTCTACGTGCATCgtgagtgttc ... tttaatgcagGTAGTCAGAGCAATTATTCAAAATTAACATATGACGGAGTTGACTTAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGCGGATTGGAAGTTTGCAGCAGAGCAGTTTGTCAAGAGATTGCCGGGAAAAGTCTACGTGCATCgtgagtgttcgtactttgtactagttgcgctcttccatttgaaacggctgcaatttattatcgcaattcgcaaaccttgaattggttccttgttccttta
- - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - AAGAGA