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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGGAGTCAAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcattgctgcagtaataataattattagtctaattcccttgtcgttgcacagctttacctgctggcagaagttcaacattgccattgaccaatgacctctaaggtcacagtttcaccatttggtaaaatttgcttttatgtaacagcagcaagaaaactgatctaagacacgcattttggtgaattttgcag

Basic information

species Zea mays
transcript GRMZM2G008216_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008216_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g14150.5 (Oryza sativa), 5'ss of exon 1
----------------------------------------TTGTGGAGTCAAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcattgctgcagtaataataat-tattagtctaattcccttg--tcgttgcacagctttacctgctggcagaagttcaacattgccattgaccaatgacctctaaggtcacagtttcaccatttggtaaaatttgcttttatgtaacagcagcaagaaaactgatctaagacacgcattttggtgaattttgcag
                                        |||||||||||||||||||||||||||| ||||||||||||||||||||| | || |||||| |||| |       | ||||  |  |  ||||||||  |    |||    |  || |||||||  ||| | |    | ||       ||  ||    || | | || |     || | || |   ||   |  | |||      |  | ||||                                              
AATATGTAAAATAAGCTAAAATAAGTTACTTTTCCTGTAGTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCACCATGAAGgtaagagtaa------aataatgcttctgcattagtcttctcagtttgatctgcagcccagctttcactgtttgggtgatttgggg--cgctttt----aaggtcttccagaagaactgctt-agtgttaacttgagttttggaaaaatttacag----------------------------------------------

upper sequence: GRMZM2G008216_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g14150.4 (Oryza sativa), 5'ss of exon 2
TTGTGGAGTCAAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcattgctgcagtaataataat-tattagtctaattcccttg--tcgttgcacagctttacctgctggcagaagttcaacattgccattgaccaatgacctctaaggtcacagtttcaccatttggtaaaatttgcttttatgtaacagcagcaagaaaactgatctaagacacgcattttggtgaattttgcag
|||||||||||||||||||||||||||| ||||||||||||||||||||| | || |||||| |||| |       | ||||  |  |  ||||||||  |    |||    |  || |||||||  ||| | |    | ||       ||  ||    || | | || |     || | || |   ||   |  | |||      |  | ||||                                              
TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCACCATGAAGgtaagagtaa------aataatgcttctgcattagtcttctcagtttgatctgcagcccagctttcactgtttgggtgatttgggg--cgctttt----aaggtcttccagaagaactgctt-agtgttaacttgagttttggaaaaatttacag----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211064651|gb|FL344071.1|FL344071
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211029655|gb|FL160177.1|FL160177
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211307979|gb|FL325109.1|FL325109
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211027219|gb|FL160172.1|FL160172
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAAACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|14202574|gb|BG836251.1|BG836251
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211098107|gb|FL309374.1|FL309374
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211277751|gb|FL328165.1|FL328165
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211456970|gb|FL307881.1|FL307881
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211155636|gb|FL334261.1|FL334261
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACARAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211296213|gb|FL367911.1|FL367911
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211531451|gb|FL327591.1|FL327591
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|32912522|gb|CF017334.1|CF017334
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211027221|gb|FL160174.1|FL160174
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|32919706|gb|CF024518.1|CF024518
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211327340|gb|FL364058.1|FL364058
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|32919530|gb|CF024342.1|CF024342
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211031209|gb|FL344489.1|FL344489
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211056302|gb|FL363850.1|FL363850
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGARGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211416918|gb|FL328810.1|FL328810
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTCCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211027216|gb|FL160169.1|FL160169
EST:     AAAGGATGGAACCATCTCGGTTKCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211337664|gb|FL335752.1|FL335752
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211105517|gb|FL308951.1|FL308951
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211520559|gb|FL367148.1|FL367148
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211528169|gb|FL316556.1|FL316556
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211103564|gb|FL331642.1|FL331642
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211027218|gb|FL160171.1|FL160171
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211152887|gb|FL357748.1|FL357748
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|60356864|gb|DN223837.1|DN223837
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211492114|gb|FL334538.1|FL334538
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211027220|gb|FL160173.1|FL160173
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211375427|gb|FL332804.1|FL332804
EST:     AAAKGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|211029654|gb|FL160176.1|FL160176
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
EST: gi|47961715|gb|CN844424.1|CN844424
EST:     AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAG                         CTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT
genomic: AAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 192

TTGTGGAGTCAAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCATATCGAGGAGTCGATTGCGGTGACGGAGGTCCATTCGGAGCAGTTGTCGT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 550

TTGTGGAGTCAAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCATATCGAGGAGTCGATTGCGGTGACGGAGGTCCATTCGGAGCAGTTGTCGT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 242

TTGTGGAGTCAAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCATATCGAGGAGTCGATTGCGGTGACGGAGGTCCATTCGGAGCAGTTGTCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 539

TTGTGGAGTCAAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcat ... aattttgcagCTGTGCAAGACAGGGATCACAAATTCTTGACAAAAGCAGTGGAAGAAGCATATCGAGGAGTCGATTGCGGTGACGGAGGTCCATTCGGAGCAGTTGTCGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGTGGAGTCAAAGGATGGAACCATCTCGGTTGCTTCTGCATTTGCTGGTTATCAGGAAGgtgagagcattgctgcagtaataataattattagtctaattcccttgtcgttgcacagctttacctgctggcagaagttcaacattgccattgaccaatgacctctaaggtcacagtttcaccatttggtaaaatttgcttttatgtaacagcagcaagaaaactgatctaagacacgcattttggtgaattttgcag

- - - - - - AGGATG
- - - - - - - GATGGA