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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCGTCACCTCCGGCGGCACTACGGTGCCCCTGGAGCAGCGTTGCGTGCGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagacagatcacacactcttgtgctttttaatgctctgtctgctcgtcctactgtggagctggtcccttcatcttttggttcattgagatcagttcaatgcag

Basic information

species Zea mays
transcript GRMZM2G008209_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008209_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g07880.1 (Oryza sativa), 5'ss of exon 3
TGTGCGTCACCTCCGGCGGCACTACGGTGCCCCTGGAGCAGCGTTGCGTGCGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagacag-atcacacactcttgtgctttttaatgctctgtctgctc-gtcctactgtggagctggtcccttcatcttttggttcattgagatcagttcaatgcag
| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| || ||||| ||||||||||| ||  ||   ||||      | |   ||  ||  || ||| ||||||  || | |||||     |||| |    |  |||  | |   ||  |  | ||||      
TCTGCGTCACCTCCGGCGGCACGACGGTGCCCCTGGAGCAGCGGTGCGTGCGCTACATCGACAACTTCAGCTCCGGCCAGCGAGGGGCCGCGTCCACCGAgtatgcttacgtcatcatgatgccct---ctcgttgctgttctctctgctttgtacaactgt----ttggtgct---aattttcagcttgctggtaa-aattcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74243666|gb|DT651580.1|DT651580
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTT-CTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|71766356|gb|DR964293.1|DR964293
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCGGTGAGT
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCGGTGAGT