Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCGTCACCTCCGGCGGCACTACGGTGCCCCTGGAGCAGCGTTGCGTGCGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagacagatcacacactcttgtgctttttaatgctctgtctgctcgtcctactgtggagctggtcccttcatcttttggttcattgagatcagttcaatgcag

Basic information

species Zea mays
transcript GRMZM2G008209_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008209_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g07880.1 (Oryza sativa), 5'ss of exon 3
TGTGCGTCACCTCCGGCGGCACTACGGTGCCCCTGGAGCAGCGTTGCGTGCGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagacag-atcacacactcttgtgctttttaatgctctgtctgctc-gtcctactgtggagctggtcccttcatcttttggttcattgagatcagttcaatgcag
| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| || ||||| ||||||||||| ||  ||   ||||      | |   ||  ||  || ||| ||||||  || | |||||     |||| |    |  |||  | |   ||  |  | ||||      
TCTGCGTCACCTCCGGCGGCACGACGGTGCCCCTGGAGCAGCGGTGCGTGCGCTACATCGACAACTTCAGCTCCGGCCAGCGAGGGGCCGCGTCCACCGAgtatgcttacgtcatcatgatgccct---ctcgttgctgttctctctgctttgtacaactgt----ttggtgct---aattttcagcttgctggtaa-aattcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78120328|gb|DV538712.1|DV538712
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|211537799|gb|FL107888.1|FL107888
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|71437508|gb|DR818558.1|DR818558
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|71318841|gb|DR796181.1|DR796181
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|74243666|gb|DT651580.1|DT651580
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTT-CTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|91875001|gb|EB404958.1|EB404958
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|76014964|gb|DT942134.1|DT942134
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|89761605|gb|DY689549.1|DY689549
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|91871996|gb|EB401953.1|EB401953
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGGCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|71307844|gb|DR790143.1|DR790143
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|89757275|gb|DY686946.1|DY686946
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|148936771|gb|EC880907.2|EC880907
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|78118463|gb|DV536848.1|DV536848
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG