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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAACTATCCCAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttcactatcggactgtactcatgtctactatctgatcatgtcaaagttctgacaattcttattattttgaattctcag

Basic information

species Zea mays
transcript GRMZM2G007276_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007276_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g38550.1 (Oryza sativa), 5'ss of exon 2
TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAACTATCCCAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttcactatcggactgtactcatgtctactatctgatcatgtcaaagttctgacaattcttattattttgaattctcag
|||||||||||||||||||||||||||||||||||||||||| ||||| || || || ||||||||||| ||||| |||| |||||||||||| ||||||||||||  |||| |             ||||  || |    || ||||  |||| |||    |||| || || |||||| ||
TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagctt-gctattga------------tctatgattttgctatatcaattttctaacagggtttataatgttcaattcttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211084191|gb|FL360419.1|FL360419
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTMTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|32840341|gb|CD980022.1|CD980022
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|166597045|gb|EG301235.1|EG301235
EST:     CATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG