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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGGATGACACGCCGTGGGACGGAGgtgagacccatccgatttagtttgcctcgatctgtaattgctcaatagctggcttctgcactttgggtactgccaatttcgttagttggtgattggttga...

Basic information

species Zea mays
transcript GRMZM2G007260_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g57790.1 (Oryza sativa), 5'ss of exon 2
GCCGGATGACACGCCGTGGGACGGAGgtgagacccatccgatttagtttgcctcgatctgtaattgctca-atagctggcttct-gcactttgggtactgccaatttcgttagttggtgattggttga-
 |||||||||||||||||||| |||||||||  ||||  || ||  ||  |||   | |||  |     | ||| || | | || |   ||  | || |      || | |   ||   | |   ||  
ACCGGATGACACGCCGTGGGATGGAGgtgag-tccatttgactt--ttccccttattttgttctgatcaagatatctagttactagtgattgtgataatttggtgtttggtgaatgaaaaattaatgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71448180|gb|DR829230.1|DR829230
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|22521069|gb|BU079880.1|BU079880
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|20803162|gb|BQ294212.1|BQ294212
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211160852|gb|FL355935.1|FL355935
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|37377294|gb|CF625238.1|CF625238
EST:     CGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: CGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211209638|gb|FL170006.1|FL170006
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211158663|gb|FL318093.1|FL318093
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|94474209|gb|EB703167.1|EB703167
EST:     CGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: CGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|89759914|gb|DY688576.1|DY688576
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|74241480|gb|DT649394.1|DT649394
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|50332498|gb|CO527624.1|CO527624
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|74241479|gb|DT649393.1|DT649393
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211212202|gb|FL170018.1|FL170018
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|44900351|gb|CK826896.1|CK826896
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|4624364|gb|AI615197.1|AI615197
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|71299516|gb|DR785767.1|DR785767
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|7031256|gb|AW461144.1|AW461144
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211209646|gb|FL170014.1|FL170014
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211416709|gb|FL320472.1|FL320472
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|71299514|gb|DR785766.1|DR785766
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTTTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211209634|gb|FL170002.1|FL170002
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|149112233|gb|EE191289.2|EE191289
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|60401065|gb|DN233872.1|DN233872
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211209637|gb|FL170005.1|FL170005
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|12972475|gb|BG268000.1|BG268000
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|148966066|gb|EE017005.2|EE017005
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211212200|gb|FL170016.1|FL170016
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|18168064|gb|BM337904.1|BM337904
EST:     CGGGCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: CGGGCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211209639|gb|FL170007.1|FL170007
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211209642|gb|FL170010.1|FL170010
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|94474208|gb|EB703166.1|EB703166
EST:     CGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: CGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|13149803|gb|BG320125.1|BG320125
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|40337033|gb|CK371103.1|CK371103
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACATAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|149112232|gb|EE191288.2|EE191288
EST:     GATGACACGCCGTGGG-CGGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCT
genomic: GATGACACGCCGTGGGAC-GGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCT
EST: gi|37397476|gb|CF636037.1|CF636037
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACATAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211212201|gb|FL170017.1|FL170017
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|18168754|gb|BM338594.1|BM338594
EST:     CGGGCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: CGGGCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211209644|gb|FL170012.1|FL170012
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|14701443|gb|BI233861.1|BI233861
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|50332499|gb|CO527625.1|CO527625
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: gi|211500859|gb|FL344778.1|FL344778
EST:     GCCGGATGACACGCCGTGGGACGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC