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TGAAACACCATGCTAAAAGAATGTGGAATGAGTCCCCAAAATATGATCCTGATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATGgtaaggaaagccttttttgagatatttaagaccagtccataatatatcgactactgagtcacatgtgagtctgttcacatctttcttttttttggttggctcgtttaaacctcactgggaacag
species | Zea mays |
transcript | GRMZM2G007229_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATG GGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTTEST: gi|71771627|gb|DR969564.1|DR969564
genomic: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATGgtaaggaaag ... ctgggaacagGGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTT
EST: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATG GGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTTEST: gi|149088158|gb|EE177297.2|EE177297
genomic: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATGgtaaggaaag ... ctgggaacagGGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTT
EST: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATG GGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTTEST: gi|78122102|gb|DV540486.1|DV540486
genomic: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATGgtaaggaaag ... ctgggaacagGGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTT
EST: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATG GGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTTEST: gi|93017682|gb|EB643202.1|EB643202
genomic: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATGgtaaggaaag ... ctgggaacagGGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTT
EST: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATG GGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTTEST: gi|78120030|gb|DV538414.1|DV538414
genomic: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATGgtaaggaaag ... ctgggaacagGGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTT
EST: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATG GGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTTEST: gi|94475735|gb|EB704693.1|EB704693
genomic: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATGgtaaggaaag ... ctgggaacagGGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTT
EST: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATG GGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTTEST: gi|94475779|gb|EB704737.1|EB704737
genomic: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATGgtaaggaaag ... ctgggaacagGGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTT
EST: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATG GGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTTEST: gi|31353753|gb|CD438110.1|CD438110
genomic: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATGgtaaggaaag ... ctgggaacagGGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTT
EST: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATG GGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTT
genomic: GATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATGgtaaggaaag ... ctgggaacagGGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCCTCTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAACACCATGCTAAAAGAATGTGGAATGAGTCCCCAAAATATGATCCTGATTCAATTGAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATGgtaaggaaagccttttttgagatatttaagaccagtccataatatatcgactactgagtcacatgtgagtctgttcacatctttcttttttttggttggctcgtttaaacctcactgggaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG