1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATGTGGAGCTTGCCAGAAGCAGATGAGGTAGCAGTACTCCCAAATTTAAGAAGAGAGGAAGAGGCTGAGCGCAAGACTGGAGACTGTAATGTAGGCAAAgtaatgcacttccttgccaactatcaatatttgaaaccctgctatcatgtggcccagttatcttgatgcaacttctatgcccttatgttaccag
species | Zea mays |
transcript | GRMZM2G007185_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAGAGAGGAAGAGGCTGAGCGCAAGACTGGAGACTGTAATGTAGGCAAA GTTCAAGGAAAACACGATTACAATGACATGTTACGTGTCTCAGATGCTCACEST: gi|211259759|gb|FL311245.1|FL311245
genomic: GAAGAGAGGAAGAGGCTGAGCGCAAGACTGGAGACTGTAATGTAGGCAAAgtaatgcact ... atgttaccagGTTCAAGGAAAACACGATTACAATGACATGTTACGTGTCTCAGATGCTCAC
EST: GAAGAGAGGAAGAGGCTGAGCGCAAGACTGGAGACTGTAATGTAGGCAAA GTTCAAGGAAAACACGATTACAATGACATGTTACGTGTCTCAGATGCTCACEST: gi|78083170|gb|DV511563.1|DV511563
genomic: GAAGAGAGGAAGAGGCTGAGCGCAAGACTGGAGACTGTAATGTAGGCAAAgtaatgcact ... atgttaccagGTTCAAGGAAAACACGATTACAATGACATGTTACGTGTCTCAGATGCTCAC
EST: GAAGAGAGGAAGAGGCTGAGCGCAAGACTGGAGACTGTAATGTAGGCAAA GTTCAAGGAAAACACGATTACAATGACATGTTACGTGTCTCAGATGCTCACEST: gi|211090803|gb|FL312058.1|FL312058
genomic: GAAGAGAGGAAGAGGCTGAGCGCAAGACTGGAGACTGTAATGTAGGCAAAgtaatgcact ... atgttaccagGTTCAAGGAAAACACGATTACAATGACATGTTACGTGTCTCAGATGCTCAC
EST: GAAGAGAGGAAGAGGCTGAGCGCAAGACTGGAGACTGTAATGTAGGCAAA GTTCAAGGAAAACACGATTACAATGACATGTTACGTGTCTCAGATGCTCAC
genomic: GAAGAGAGGAAGAGGCTGAGCGCAAGACTGGAGACTGTAATGTAGGCAAAgtaatgcact ... atgttaccagGTTCAAGGAAAACACGATTACAATGACATGTTACGTGTCTCAGATGCTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTGGAGCTTGCCAGAAGCAGATGAGGTAGCAGTACTCCCAAATTTAAGAAGAGAGGAAGAGGCTGAGCGCAAGACTGGAGACTGTAATGTAGGCAAAgtaatgcacttccttgccaactatcaatatttgaaaccctgctatcatgtggcccagttatcttgatgcaacttctatgcccttatgttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA