1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTGGCGGTGGAAAACTACGCCGCGTTCATCGCCGCCTCTGAGGCGCTCTCCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggccggtccctccctactcgtagtactctttactccgttgctttctctgccccctttataccaaaagttgttgctccatgtagttcagtaagt...
species | Zea mays |
transcript | GRMZM2G006781_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCCEST: gi|148939698|gb|EC884368.2|EC884368
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCCEST: gi|148979834|gb|EE026851.2|EE026851
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCCEST: gi|4730483|gb|AI649649.1|AI649649
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCCEST: gi|71305530|gb|DR788908.1|DR788908
genomic: CAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCCEST: gi|211334830|gb|FL416303.1|FL416303
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCCEST: gi|148986186|gb|EE029955.2|EE029955
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCCEST: gi|71316958|gb|DR795163.1|DR795163
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCCEST: gi|211423964|gb|FL408859.1|FL408859
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGTGATACCAAACTTAACATCTGGCTGCCCTGAGTTTGTTGAATCCEST: gi|86469576|gb|DY235946.1|DY235946
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CCTTCGTCCGCGCGCATCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGATTTTGTTGAATCCEST: gi|148963434|gb|EE014450.2|EE014450
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCCEST: gi|148999331|gb|EE036267.2|EE036267
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCCEST: gi|211082178|gb|FL396889.1|FL396889
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCNAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCCEST: gi|71449856|gb|DR830906.1|DR830906
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGCGGTGGAAAACTACGCCGCGTTCATCGCCGCCTCTGAGGCGCTCTCCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggccggtccctccctactcgtagtactctttactccgttgctttctctgccccctttataccaaaagttgttgctccatgtagttcagtaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcccc