Sequence
atgc intronic sequence ATGC exonic sequenceATACTGCTTGTGGTGTTGCGCCAATTTAAGTTCCTGCTGTCCGCAAAAGGAGAGCTTCCGCAGCTCCTATGGCAAAGCCTCCCAATAGCATTGGCCGTAGgtatgttcactaccacatccacaaatttcattttaatatataaatagtccttgtttagtctgtatatttaactactagtgtacctaatgtcggataattttgtgtcctcgttgccactcatcctaattttactgccaatatttgtcagcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G006507_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g19510.2 (Oryza sativa), 5'ss of exon 2
ATACTGCTTGTGGTGTTGCGCCAATTTAAGTTCCTGCTGTCC-GCAAAAGGAGAGCTTCCGCAGCTCCTATGGCAAAGCCTCCCAATAGCATTGGCCGTAGgtatgttcactaccacatccacaa-------------atttcattttaatatataa--atagtccttgtttagtctgta---tatttaactactagtgt--acctaatgtcggataattttgt---gtcctcgttgccactcatcctaattttactgccaatatttgtcagcag---
|| ||| | | | | | | | || ||| || | ||||| || ||||||||| ||| | |||||||||||||||||||| ||| ||| || | || |||| ||| | | || | | | || ||||| | || ||| || ||| | ||| | ||| | || ||| | | | ||| |||||| | || || ||| ||| ||
------CTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGGGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttgatactgcagctactgtttattcttaactgtttcttttccgtttctagcgctgattgataatttatctgttgcccacttgtctagtaacaccaaccaagtgttctttttctttctacggtgctcatggttgcacattgtaatttaattgtgaacattcatcatcaacag
upper sequence: GRMZM2G006507_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g19510.1 (Oryza sativa), 5'ss of exon 2
ATACTGCTTGTGGTGTTGCGCCAATTTAAGTTCCTGCTGTCC-GCAAAAGGAGAGCTTCCGCAGCTCCTATGGCAAAGCCTCCCAATAGCATTGGCCGTAGgtatgttcactaccacatccacaa-------------atttcattttaatatataaa--tagtccttgtttagtctgta---tatttaactactagtgt--acctaatgtcggataattttgt---gtcctcgttgccactcatcctaattttactgccaatatttgtcagcag---
| | ||| ||| | | | | | | | || ||| || | ||||| || ||||||||| ||| | |||||||||||||||||||| ||| ||| || | || |||| ||| | | || | | | || ||||| | || ||| || ||| | ||| | ||| | || ||| | | | ||| |||||| | || || ||| ||| ||
-TGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGGGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttgatactgcagctactgtttattcttaactgtttcttttccgtttctagcgctgattgataatttatctgttgcccacttgtctagtaacaccaaccaagtgttctttttctttctacggtgctcatggttgcacattgtaatttaattgtgaacattcatcatcaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18964821|gb|BM661215.1|BM661215EST: AGCTTCCGCAGCTCCTATGGCAAAGCCTCCCAATAGCATTGGCCGTAG CAGCATGCCAAGATCGAATGAGGGTTTGAGGCTCATATTTTCGGCAGTTAT
genomic: AGCTTCCGCAGCTCCTATGGCAAAGCCTCCCAATAGCATTGGCCGTAGgtatgttcac ... ttgtcagcagCAGCATGCCAAGATCGAATGAGGGTTTGAGGCTCATATTTTCGGCAGTTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACTGCTTGTGGTGTTGCGCCAATTTAAGTTCCTGCTGTCCGCAAAAGGAGAGCTTCCGCAGCTCCTATGGCAAAGCCTCCCAATAGCATTGGCCGTAGgtatgttcactaccacatccacaaatttcattttaatatataaatagtccttgtttagtctgtatatttaactactagtgtacctaatgtcggataattttgtgtcctcgttgccactcatcctaattttactgccaatatttgtcagcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG