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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCGGCGGGGAGTTCGCCGCCGAGGCCGTCGCCCACGCCGCCTTGTCCGGCGCCTTCGACTGCTATGCGCCGTCCTTCGGCTTCCCCGACGCCCGCCGgtgagtcccagtcgcctagccatcacactcacaccacaccacaccacacgcatcgaattcccattttttcaaagccaagtacagcacgagtatccagcgg...

Basic information

species Zea mays
transcript GRMZM2G006480_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006480_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g42510.2 (Oryza sativa), 5'ss of exon 3
GCCGCGGCGGGGAGTTCGCCGCCGAGGCCGTCGCCCACGCCGCCTTGTCCGGCGCCTTCGACTGCTATGCGCCGTCCTTCGGCTTCCCCGACGCCCGCCGgtgagt--cccagtcgcctagccatcacactcacaccacaccacaccacacgcatcgaattcccattttttcaaagccaagtacagc--acgagtatccagcgg
| |||||||| |||||||| ||||| ||||||||| |||| |||  |||||| |  ||||||||||| |||||||| | ||||||||| | ||| |||||||||||  ||  ||| |     | ||    |||      |    |  |      |  | ||||  || |||        | |  |     | ||||| |     
GGCGCGGCGGCGAGTTCGCGGCCGACGCCGTCGCCGACGCGGCCAGGTCCGGGGTGTTCGACTGCTACGCGCCGTCGTGCGGCTTCCCGGCCGCTCGCCGgtgagtatccatgtctctgcttcttcttgttcatgttcaagttaattaattcttttaatttcctgttgttttgtgagtgaatttaatttgcaagtattcg----