1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACAATTCTCAAGGGAGAAATATTCCAGAGAGTGCACCCCAACCTGCTATTGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaatcttttagtttgatttgataatttggaagtaggaacctttaattgacattaatgcatgtccaccttctcaattttctcag
species | Zea mays |
transcript | GRMZM2G006468_T05 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|60355084|gb|DN222057.1|DN222057
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|5895762|gb|AW037008.1|AW037008
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGCTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|74242180|gb|DT650094.1|DT650094
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|13178078|gb|BG349336.1|BG349336
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|211186703|gb|FL252848.1|FL252848
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAATTCTCAAGGGAGAAATATTCCAGAGAGTGCACCCCAACCTGCTATTGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaatcttttagtttgatttgataatttggaagtaggaacctttaattgacattaatgcatgtccaccttctcaattttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG