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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCCGTGGCTTTTGTCTTTGGCTCAACATTTGTGTGTCGTAATATGGATGCGGCAAAAGAGgtactgttgcttcttcagttttttttttaatatagtatagtttagttgaatctgtatccaaagtataattcaaaatatgtggttgatagtggtatgttaattcttttgatacag

Basic information

species Zea mays
transcript GRMZM2G006452_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006452_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g67740.1 (Oryza sativa), 5'ss of exon 8
AATGCCGTGGCTTTTGTCTTTGGCTCAACATTTGTGTGTCGTAATATGGATGCGGCAAAAGAGgtactgttgcttcttcagttttttttttaatatagtatagtttagttgaatctgt-atccaaagtata----attcaaaatatgt-ggttgatagtggtatgtt-aattcttttgatacag---
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AATGCTATGACTTATGTCTTTGGTTCAACATTTGTGTGTCGAAATATGGAATCCGCGAAAGAGgtaatactgcat-tcaggaaatttttttgcttcagttt---ttactgagggctgtcaattgaagtatgatatatacgtaaaatgttggttcctattgttacatttgattctgttctttccatag