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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACTCTCTTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGTgtgagtggttcccctgttcttggccaattctctttggccggcttgatttgtttccagcagccctttatctgattctgaataatgtgttgcag

Basic information

species Zea mays
transcript GRMZM2G006069_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006069_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g02710.3 (Oryza sativa), 5'ss of exon 2
TGACTCTCTTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGTgtgagtggttcccctgttcttggccaattctctttggccggcttgatttgtt---tccagcagccctttatctgattctgaataatgtgttgcag
||| || |||||| |||| |||||||| |||||||| |||||| |   ||| ||||||||||||||||   |||  ||    || |  |  |||||| | ||| ||||||   | |    |    ||||   ||| ||| | |   |||||||
TGATTCCCTTCTGAGTGATATCAAGGCCTTGGTTGCCCGGCATCCAGACAAgttgagtgtgagtggtttaactgccctatttcagtcattgttggccagtttgttttgttgcatactagtgtttcttatgaaattttgattgaatcgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74244217|gb|DT652131.1|DT652131
EST:     TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGT                         ATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
genomic: TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGTgtgagtggtt ... tgtgttgcagATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
EST: gi|211221619|gb|FL170902.1|FL170902
EST:     TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGT                         ATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
genomic: TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGTgtgagtggtt ... tgtgttgcagATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
EST: gi|18178045|gb|BM379255.1|BM379255
EST:     TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGT                         ATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
genomic: TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGTgtgagtggtt ... tgtgttgcagATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
EST: gi|211221621|gb|FL170904.1|FL170904
EST:     TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGT                         ATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
genomic: TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGTgtgagtggtt ... tgtgttgcagATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
EST: gi|211221616|gb|FL170899.1|FL170899
EST:     TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGT                         ATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
genomic: TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGTgtgagtggtt ... tgtgttgcagATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
EST: gi|76283051|gb|DV022619.1|DV022619
EST:     TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGT                         ATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
genomic: TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGTgtgagtggtt ... tgtgttgcagATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
EST: gi|211221618|gb|FL170901.1|FL170901
EST:     TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGT                         ATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
genomic: TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGTgtgagtggtt ... tgtgttgcagATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
EST: gi|211221617|gb|FL170900.1|FL170900
EST:     TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGT                         ATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
genomic: TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGTgtgagtggtt ... tgtgttgcagATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
EST: gi|211221620|gb|FL170903.1|FL170903
EST:     TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGT                         ATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA
genomic: TTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGTgtgagtggtt ... tgtgttgcagATGGACACTATCAAAACAAGCAACAAAGGCTATTCTGCAGAGCTGTTTGTA