Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcatttcttattttatcctgtaatgtgatccctcatgctcgtgtagctacacgtcagatacatcggattaatgattttcacaaatggatgcttg...

Basic information

species Zea mays
transcript GRMZM2G005737_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G005737_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g01840.1 (Oryza sativa), 5'ss of exon 2
GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcatttcttattttatcctgtaatgtgatccctcatgctcgtgtagctacacgtcagata--catcggattaatgattttcacaaatggatgcttg---
|| | |||| ||||||||||||| || |||||| ||||||||||||||||  |||||||||| ||||| ||||||||||| |||    | | | || |||  | |  ||   |         | |||| ||||    |||  ||    || |||     || ||   | |   |||||     
GTTAGGAAGATTATCAAGGAGAAAAACGATGATCCTGGAATTTCTGAATACCTTGATATGGAAAAGGAACTTCAAGAGgtgagtatcctgcatgttgtatgttatgctgctgtgtact----ttgtgttgctaggtatcaactaattgtcagatgccatatctt-gtacactaatgctaatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211368456|gb|FL037566.1|FL037566
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144983|gb|FK968676.1|FK968676
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144990|gb|FK968683.1|FK968683
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144986|gb|FK968679.1|FK968679
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211371102|gb|FL037574.1|FL037574
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144976|gb|FK968669.1|FK968669
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211147843|gb|FK968702.1|FK968702
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211146425|gb|FK968698.1|FK968698
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211146413|gb|FK968686.1|FK968686
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTA-CCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144978|gb|FK968671.1|FK968671
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211371099|gb|FL037571.1|FL037571
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|71449332|gb|DR830382.1|DR830382
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211146412|gb|FK968685.1|FK968685
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211371101|gb|FL037573.1|FL037573
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|148939314|gb|EC883829.2|EC883829
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|93282956|gb|EB675220.1|EB675220
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211368451|gb|FL037561.1|FL037561
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211368454|gb|FL037564.1|FL037564
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211146421|gb|FK968694.1|FK968694
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTNACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|78075367|gb|DV503801.1|DV503801
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|31357633|gb|CD441990.1|CD441990
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211147844|gb|FK968703.1|FK968703
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACSTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211368458|gb|FL037568.1|FL037568
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211146414|gb|FK968687.1|FK968687
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211143551|gb|FK968667.1|FK968667
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTNACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211146417|gb|FK968690.1|FK968690
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144987|gb|FK968680.1|FK968680
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211147849|gb|FK968708.1|FK968708
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211147840|gb|FK968699.1|FK968699
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACYGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144989|gb|FK968682.1|FK968682
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144977|gb|FK968670.1|FK968670
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211143550|gb|FK968666.1|FK968666
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211368457|gb|FL037567.1|FL037567
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211371100|gb|FL037572.1|FL037572
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211147846|gb|FK968705.1|FK968705
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144984|gb|FK968677.1|FK968677
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144981|gb|FK968674.1|FK968674
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTNACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144982|gb|FK968675.1|FK968675
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144980|gb|FK968673.1|FK968673
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211146415|gb|FK968688.1|FK968688
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211147848|gb|FK968707.1|FK968707
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211146420|gb|FK968693.1|FK968693
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211144985|gb|FK968678.1|FK968678
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
EST: gi|211371098|gb|FL037570.1|FL037570
EST:     ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAAGAGCTTCAAGAG                         GTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT
genomic: ATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 430

GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGTGCCCAGAATGTTGCAGGTCTATCACCGCCAAGCTATTCAGCTGGAGTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 268

GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGTGCCCAGAATGTTGCAGGTCTATCACCGCCAAGCTATTCAGCTGGAGTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 242

GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGTGCCCAGAATGTTGCAGGTCTATCACCGCCAAGCTATTCAGCTGGAGTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 310

GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcat ... tttgctgcagGTCATAACGTTAACCGAAGAGATTTTGGCAACTGCAAAGCAAACTGAGAGTGCCCAGAATGTTGCAGGTCTATCACCGCCAAGCTATTCAGCTGGAGTGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATATATTGATATGGAGAAGGAGCTTCAAGAGgtcagttcatttcttattttatcctgtaatgtgatccctcatgctcgtgtagctacacgtcagatacatcggattaatgattttcacaaatggatgcttg

- - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatccctc