1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGCGCGCCCTACCTGCGGAAGGTGGACCTGCAGGCGTACGCCGGCTACGACCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgctaccgtcccaccaccaccccctcgcttcgtgcttcctcctgggtctaatttccgcagcgctttgctctgtttggtcgagcgttccggctgacggagggtttttttttttggtttggatgcgcgcgcag
species | Zea mays |
transcript | GRMZM2G004696_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGEST: gi|161591654|gb|EY960089.1|EY960089
genomic: CTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTEST: gi|31612277|gb|CD568899.1|CD568899
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGT
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGATCTTCTCCCACTTCACCATCA GGAAAGT-CGCCGACGACCAGAAGAAGCTGGTGGACGEST: gi|18173156|gb|BM348544.1|BM348544
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAA-GTTCGCCGACGACGAGAGGAAGCTGGTGGACG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGEST: gi|18162902|gb|BM332741.1|BM332741
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGEST: gi|31612276|gb|CD568898.1|CD568898
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGEST: gi|15632305|gb|BI679398.1|BI679398
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGEST: gi|18163244|gb|BM333083.1|BM333083
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGATGGTGGACGCGGTGAACGGGACGGEST: gi|31362759|gb|CD447116.1|CD447116
genomic: CTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGEST: gi|211380527|gb|FL436057.1|FL436057
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGEST: gi|56382192|gb|CV984861.1|CV984861
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGEST: gi|78105144|gb|DV523562.1|DV523562
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGEST: gi|18175256|gb|BM350636.1|BM350636
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGEST: gi|211380526|gb|FL436056.1|FL436056
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGEST: gi|18163782|gb|BM333621.1|BM333621
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGEST: gi|18168464|gb|BM338304.1|BM338304
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
EST: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCA GGAAGTTCGCCGACGACGAGAGGAAGCTGGTGAACGCGGTGAACGGGACGG
genomic: CCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgcta ... gcgcgcgcagGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCGCCCTACCTGCGGAAGGTGGACCTGCAGGCGTACGCCGGCTACGACCAGCTGCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCAgtcagtgctaccgtcccaccaccaccccctcgcttcgtgcttcctcctgggtctaatttccgcagcgctttgctctgtttggtcgagcgttccggctgacggagggtttttttttttggtttggatgcgcgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT