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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgcttaatttgtcccgtattgctacccattcatgcggacgagtattctcgttcatctttttcccattccatggccttaatcgaaacctgaatctgttggtggttgtcgtttcag

Basic information

species Zea mays
transcript GRMZM2G004528_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 2
GGTCATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgcttaatttgtcccgtattgctacccattcatgcggacgagtattctcgttcatctttttcccattccatggccttaatcgaaacctgaatctgttggtggttgtcgtttcag
||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||| | |      | |    | ||||   |         | ||        ||||||| |||    ||   ||   ||||  ||          || |||||   ||    ||||
GGTGATGCTCGTGGGGTGGGGCGGCAACAACGGCTCAACGCTGACGGCTGGGGTCATCGCCAACAGGGAgtaagtgatca------ctcacgct-ctacttttctgcctaagctagc-------ttcatctgttttttcttttctgaatttaactga----------tgatggtgtgagtttaatcag

upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 2
lower sequence: PP1S267_10V6.1 (Physcomitrella patens), 5'ss of exon 2
GGTCATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgcttaatttgtcccgtattgctacccattcatgcggacgagtattctcgttcatctt-tttcccattccatggc-cttaatcgaaacctg--aatctgttggtggttgtcgtttcag
  | |||||||| |||||||| ||||||||||| ||||| || ||||||||  |  |||| ||||| ||||||||  |  |  | |||          | ||||   | |      ||   | ||| ||||  ||| | |     | || |||  ||     |||  ||  | ||  | |  |  ||  |||
AATGATGCTTGTTGGGTGGGGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtcttagacctctcct------tctcgcattttcgtgttatgttagattggtttatctggttttctacaatgttgctcttcgtctgtgtctgctaacattttattag--ggtgtaacag