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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCATGGATTACCACCTCCTCACCCTGCTATGCCACTGCCTCATCCTCACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagtgggatcccttaaaacttgtgttgtggttttatttatgctgataatgctagtttaacccggtttacacgtttatgcagcatctgcatgttt...

Basic information

species Zea mays
transcript GRMZM2G004349_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004349_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g45050.2 (Oryza sativa), 5'ss of exon 2
AGGTCATGGATTACCACCTCCTCACCCTGCTATGCCACTGCCTCATCCTCACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagtta---gtgggatcccttaaaacttgtgttgtggttttatttatgctgataatgctagtttaacccggtttacacgtttatgcagcatctgcatgttt
| ||||||||||| || |||||||||||| | ||||||||  ||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||||||| |    ||    ||   |   | |       |  |   | |||   ||  | ||  |  |||||  | | ||    |||||   || | |  ||    
AAGTCATGGATTATCATCTCCTCACCCTGTTGTGCCACTGTATCATCCTCACCCTGGCCATGCTCTTCCTCTGGTCCAATGCCTCAACTTTCATCAACAAgtgagcttcctgtaacttcaactgttattcacaacata-tcaaacttaaattgtcagtggcatgttaacttgatctagctttttat-tggcctatagattaa-

upper sequence: GRMZM2G004349_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv15s0046g01760.t01 (Vitis vinifera), 5'ss of exon 2
AGGTCATGGATTACCACCTCCTCACCCTGCTATGCCACTGCCTCATCCTCACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagtgggatcccttaaaacttgtgttgtggttttatttatgctgataatgctagtttaacccggtttacacgtttatgcagcatctgcatgttt
|  |  | || ||||| |||||||||||  | ||||||    | || ||| | || || ||||||||||| |||||||| ||||| || ||||||||||||| || |  ||   |    | |  ||| | |||  || |  |||| | | | | || || | |||   | |||  | || ||                  
AATTGCTTGAATACCATCTCCTCACCCTTGTTTGCCACATTTTGATACTCTCTCTTGCAATCCTGTTCCTTTGGTCCAACGCCACCACCTTCATCAACAAgtaagcttctgcattatagtgacccttct-ttgatgtgtagttta-gttaa-attgtta-tgtaatt-gtttttaatgtatag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30306983|gb|CD001656.1|CD001656
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211532251|gb|FL240253.1|FL240253
EST:     ACCCTGGCCATCCTGTTC-TCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211535240|gb|FL240256.1|FL240256
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211538248|gb|FL240274.1|FL240274
EST:     ACCCTGGCCATCCTGTTCCTMTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCA
EST: gi|211538249|gb|FL240275.1|FL240275
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAAGATCCCA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAA-GATCCCA
EST: gi|32913134|gb|CF017946.1|CF017946
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|76933464|gb|DV173471.1|DV173471
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|26559591|gb|CA831826.1|CA831826
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|149026779|gb|EE046142.2|EE046142
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211538246|gb|FL240272.1|FL240272
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCMAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGA
EST: gi|78090540|gb|DV518914.1|DV518914
EST:     CTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: CTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211115304|gb|FL172236.1|FL172236
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|22715413|gb|BU197749.1|BU197749
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|30307151|gb|CD001824.1|CD001824
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211535241|gb|FL240257.1|FL240257
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|78115575|gb|DV533963.1|DV533963
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|24773135|gb|CA408389.1|CA408389
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|34391153|gb|CF384381.1|CF384381
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211137966|gb|FK978944.1|FK978944
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGAT
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGAT
EST: gi|211137036|gb|FK978936.1|FK978936
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|149067456|gb|EE157665.2|EE157665
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211535244|gb|FL240260.1|FL240260
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGT
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGT
EST: gi|78090541|gb|DV518915.1|DV518915
EST:     CTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: CTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211116081|gb|FL172238.1|FL172238
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|87156428|gb|DY401217.1|DY401217
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211535252|gb|FL240268.1|FL240268
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTTCCTAACATCCCCGAGGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCT-CCTAACATCCCCGAGGTGAA
EST: gi|76933462|gb|DV173470.1|DV173470
EST:     GTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: GTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|149000370|gb|EE037534.2|EE037534
EST:     GTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: GTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|101388885|gb|EB816424.1|EB816424
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211538256|gb|FL240282.1|FL240282
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCANTGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|148931531|gb|EC874584.2|EC874584
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211137965|gb|FK978943.1|FK978943
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTG
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTG
EST: gi|9952753|gb|BE639216.1|BE639216
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|71438089|gb|DR819139.1|DR819139
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|71435537|gb|DR816587.1|DR816587
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|67015492|gb|CO444241.1|CO444241
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|14203412|gb|BG837089.1|BG837089
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|149000371|gb|EE037535.2|EE037535
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211535243|gb|FL240259.1|FL240259
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGAT
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGAT
EST: gi|31612033|gb|CD568655.1|CD568655
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|24934739|gb|CA452957.1|CA452957
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|148965338|gb|EC906111.2|EC906111
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|71764684|gb|DR962621.1|DR962621
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|71304053|gb|DR788148.1|DR788148
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
EST: gi|211137033|gb|FK978933.1|FK978933
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTG
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTG
EST: gi|211538251|gb|FL240277.1|FL240277
EST:     CCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGA
genomic: CCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTT--CATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGA
EST: gi|211137029|gb|FK978929.1|FK978929
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCC
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCC
EST: gi|26557842|gb|CA830077.1|CA830077
EST:     ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAA                         GTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA
genomic: ACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 473

AGGTCATGGATTACCACCTCCTCACCCTGCTATGCCACTGCCTCATCCTCACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAATGTTGCACGTTCCCTGAGATATGAGATCAACAGGGGTTTTGCTACCTTG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 134

AGGTCATGGATTACCACCTCCTCACCCTGCTATGCCACTGCCTCATCCTCACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAATGTTGCACGTTCCCTGAGATATGAGATCAACAGGGGTTTTGCTACCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 127

AGGTCATGGATTACCACCTCCTCACCCTGCTATGCCACTGCCTCATCCTCACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAATGTTGCACGTTCCCTGAGATATGAGATCAACAGGGGTTTTGCTACCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 222

AGGTCATGGATTACCACCTCCTCACCCTGCTATGCCACTGCCTCATCCTCACCCTGGCCATCCTGTTCCTCTGGTCCAATGCCACGACTTTCATCAACAAgtgagttagt ... gcatatttagGTCTCCTCCTAACATCCCCGAGGTGAAGATCCCAGATGACCTGGCTGTGAATGTTGCACGTTCCCTGAGATATGAGATCAACAGGGGTTTTGCTACCTTG