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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCCCAGCCTGTCAAGGCGCTGCAGGGGCTCAAGATCAAACAGATTGCCTGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgttataacttgttgggagtatatactaaagtgtttgtttgggattataatctatccagattatataatccaacaaattttgaactaacacaa...

Basic information

species Zea mays
transcript GRMZM2G003565_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003565_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g35570.3 (Oryza sativa), 5'ss of exon 2
CGCCCCAGCCTGTCAAGGCGCTGCAGGGGCTCAAGATCAAACAGATTGCCTGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgttataacttgttgggagtatatactaaagtgtttgtttgggattataatctatccagattatataatccaacaaat-tttgaactaacacaa----
| || ||||| |||||||| ||||||||| | |||||||| ||||| || ||||| || |||||||||||||||||||| ||||| || |||||||| |||||||     |  |  | | ||  |  |   |        |    ||     ||||      |  |||| |||| |          | ||| ||     ||    
CTCCTCAGCCAGTCAAGGCCCTGCAGGGGATAAAGATCAAGCAGATAGCTTGCGGCGATAGCCATTGTCTTGCCGTCACTATGGCAGGTGAAGTGCAAAGgtgag-----tgaagatcgctgtaaacagccatctgcccatactatttactgtatataactccaggattgtatagtatggttgtcatgtgatcttgtttaaagct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149081769|gb|EE170923.2|EE170923
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|74242358|gb|DT650272.1|DT650272
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|78083395|gb|DV511788.1|DV511788
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|76292269|gb|DV031837.1|DV031837
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|71443885|gb|DR824935.1|DR824935
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|148962509|gb|EE013375.2|EE013375
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|148997934|gb|EE035924.2|EE035924
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|94472276|gb|EB701234.1|EB701234
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211087173|gb|FL255716.1|FL255716
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGA
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGA
EST: gi|211476171|gb|FL255691.1|FL255691
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAAC-ACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|50327505|gb|CO522631.1|CO522631
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211087165|gb|FL255708.1|FL255708
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TGGGGGCCGTAACCAAAACGGACAGCTAGGCCCTTGGAACCCACTGA-GAC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCC-TTGGAACC-ACTGAAGAC
EST: gi|211473659|gb|FL255683.1|FL255683
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|148932729|gb|EC876722.2|EC876722
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211089615|gb|FL255722.1|FL255722
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGGCGGAGAAGTGCAGAG                         TTGGGGGCGTAAACCAAACCG-ACAGCTAGGC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAA-CCAAAACGGACAGCTAGGC
EST: gi|211087161|gb|FL255704.1|FL255704
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211087163|gb|FL255706.1|FL255706
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|50331209|gb|CO526335.1|CO526335
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|76919945|gb|DV167932.1|DV167932
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211087164|gb|FL255707.1|FL255707
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|149045955|gb|EE047952.2|EE047952
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|71429567|gb|DR810617.1|DR810617
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211087162|gb|FL255705.1|FL255705
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAAC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAAC
EST: gi|149104407|gb|EE289851.2|EE289851
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCCAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|71326195|gb|DR799787.1|DR799787
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211471124|gb|FL255668.1|FL255668
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACT
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACT
EST: gi|71765236|gb|DR963173.1|DR963173
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211476180|gb|FL255700.1|FL255700
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211087167|gb|FL255710.1|FL255710
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|93013100|gb|EB638620.1|EB638620
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211473652|gb|FL255676.1|FL255676
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|76935832|gb|DV174484.1|DV174484
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTT
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTT
EST: gi|211471121|gb|FL255665.1|FL255665
EST:     TCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211471126|gb|FL255670.1|FL255670
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|94477211|gb|EB706169.1|EB706169
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|71437258|gb|DR818308.1|DR818308
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|71437421|gb|DR818471.1|DR818471
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|76921103|gb|DV168454.1|DV168454
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211473657|gb|FL255681.1|FL255681
EST:     TCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|148938456|gb|EC882774.2|EC882774
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|148945557|gb|EC890809.2|EC890809
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211087168|gb|FL255711.1|FL255711
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|50339099|gb|CO534225.1|CO534225
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211471117|gb|FL255661.1|FL255661
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTTGGA-CCACTGAA
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTT-GGAACCACTGAA
EST: gi|211476169|gb|FL255689.1|FL255689
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|71771589|gb|DR969526.1|DR969526
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|149044934|gb|EE047736.2|EE047736
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|148943352|gb|EC888411.2|EC888411
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211471128|gb|FL255672.1|FL255672
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTA
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTA
EST: gi|149084074|gb|EE173473.2|EE173473
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|76283808|gb|DV023376.1|DV023376
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211087171|gb|FL255714.1|FL255714
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCAC-ATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAAC-AAAACGGACAGCTAGGCCTTGGAACCACTG
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTG
EST: gi|211473662|gb|FL255686.1|FL255686
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTG
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTG
EST: gi|211471122|gb|FL255666.1|FL255666
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|149079582|gb|EE168570.2|EE168570
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|148994201|gb|EE033995.2|EE033995
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211476175|gb|FL255695.1|FL255695
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATG-CCGGAGAAGTGCAGAG                         TTGGGGCCCGTA-CCAAAACGGACAGCTAGGCCTTGGGAAC-ACTGAAGAC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCC-GTAACCAAAACGGACAGCTAGGCCTTGG-AACCACTGAAGAC
EST: gi|211473655|gb|FL255679.1|FL255679
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211471130|gb|FL255674.1|FL255674
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211473663|gb|FL255687.1|FL255687
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|50339533|gb|CO534659.1|CO534659
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG                         TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: gi|211471123|gb|FL255667.1|FL255667
EST:     TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGC-GGAGAAGTGCAGAG                         TTGGGGCCGTAAACAAAACGGACAGCTAGGCCTTGGAAACACTGA
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCCCAGCCTGTCAAGGCGCTGCAGGGGCTCAAGATCAAACAGATTGCCTGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgttataacttgttgggagtatatactaaagtgtttgtttgggattataatctatccagattatataatccaacaaattttgaactaacacaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT