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CGCCCCAGCCTGTCAAGGCGCTGCAGGGGCTCAAGATCAAACAGATTGCCTGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgttataacttgttgggagtatatactaaagtgtttgtttgggattataatctatccagattatataatccaacaaattttgaactaacacaa...
species | Zea mays |
transcript | GRMZM2G003565_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TGGGGGCCGTAACCAAAACGGACAGCTAGGCCCTTGGAACCCACTGA-GACEST: gi|211087164|gb|FL255707.1|FL255707
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCC-TTGGAACC-ACTGAAGAC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTCEST: gi|211087173|gb|FL255716.1|FL255716
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAEST: gi|211476171|gb|FL255691.1|FL255691
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGA
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAAC-ACTGAAGACTCEST: gi|211473659|gb|FL255683.1|FL255683
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTCEST: gi|211089615|gb|FL255722.1|FL255722
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGGCGGAGAAGTGCAGAG TTGGGGGCGTAAACCAAACCG-ACAGCTAGGCEST: gi|211087162|gb|FL255705.1|FL255705
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAA-CCAAAACGGACAGCTAGGC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACEST: gi|211471124|gb|FL255668.1|FL255668
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAAC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTEST: gi|211471130|gb|FL255674.1|FL255674
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACT
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTCEST: gi|211473652|gb|FL255676.1|FL255676
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTCEST: gi|76935832|gb|DV174484.1|DV174484
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTEST: gi|211473655|gb|FL255679.1|FL255679
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTT
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTCEST: gi|211087168|gb|FL255711.1|FL255711
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTCEST: gi|211148346|gb|FL363505.1|FL363505
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTCEST: gi|211476175|gb|FL255695.1|FL255695
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATG-CCGGAGAAGTGCAGAG TTGGGGCCCGTA-CCAAAACGGACAGCTAGGCCTTGGGAAC-ACTGAAGACEST: gi|211471117|gb|FL255661.1|FL255661
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCC-GTAACCAAAACGGACAGCTAGGCCTTGG-AACCACTGAAGAC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTTGGA-CCACTGAAEST: gi|50339533|gb|CO534659.1|CO534659
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTT-GGAACCACTGAA
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTCEST: gi|211476169|gb|FL255689.1|FL255689
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTCEST: gi|211471128|gb|FL255672.1|FL255672
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAEST: gi|211087171|gb|FL255714.1|FL255714
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTA
EST: TGCGGGGACAGCCATTGTCTTGCCGTCAC-ATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAAC-AAAACGGACAGCTAGGCCTTGGAACCACTGEST: gi|211473662|gb|FL255686.1|FL255686
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTG
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGEST: gi|71446512|gb|DR827562.1|DR827562
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTG
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTCEST: gi|211473660|gb|FL255684.1|FL255684
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCAC-ATGGCCGGAGAAGTGCAGAG TTGGGGGCGTAAC-AAAACGGACAGCTAGGCCTTGAAAC-ACTGGAGACTCEST: gi|211471122|gb|FL255666.1|FL255666
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTCEST: gi|211473663|gb|FL255687.1|FL255687
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAG TTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTCEST: gi|211471123|gb|FL255667.1|FL255667
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGAAGACTC
EST: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGC-GGAGAAGTGCAGAG TTGGGGCCGTAAACAAAACGGACAGCTAGGCCTTGGAAACACTGA
genomic: TGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgt ... cgtatcgtagTTGGGGCCGTAACCAAAACGGACAGCTAGGCCTTGGAACCACTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCCCAGCCTGTCAAGGCGCTGCAGGGGCTCAAGATCAAACAGATTGCCTGCGGGGACAGCCATTGTCTTGCCGTCACCATGGCCGGAGAAGTGCAGAGgtgagcatgttataacttgttgggagtatatactaaagtgtttgtttgggattataatctatccagattatataatccaacaaattttgaactaacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT