1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCGACTTCGCTAGCATGATGAACCCCGGCTCGCGCCAGATTTATCTGACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAGgtatgcatgcacacacggtaatgtgatgctccaatctttgcttccgtagaaccccgtttggttggctgacttgaccatcgcgcttcttgttggcaatgcggtgcag
species | Zea mays |
transcript | GRMZM2G003424_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAG CATCTACGGTCCAGTTCACGACGTGCGCATCCCCTACCAGCAGAAGCGCATEST: gi|149015221|gb|EE045006.2|EE045006
genomic: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAGgtatgcatgc ... tgcggtgcagCATCTACGGTCCAGTTCACGACGTGCGCATCCCCTACCAGCAGAAGCGCAT
EST: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAG CATCTACGGTCCAGTTCACGACGTGCGCATCCCCTACCAGCAGAAGCGCATEST: gi|9254329|gb|BE344797.1|BE344797
genomic: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAGgtatgcatgc ... tgcggtgcagCATCTACGGTCCAGTTCACGACGTGCGCATCCCCTACCAGCAGAAGCGCAT
EST: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAG CATCTACGGTCCAGTTCACGACGTGCGCATCCCCTACCAGCAGAAGCGCATEST: gi|71757084|gb|DR955021.1|DR955021
genomic: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAGgtatgcatgc ... tgcggtgcagCATCTACGGTCCAGTTCACGACGTGCGCATCCCCTACCAGCAGAAGCGCAT
EST: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAG CATCTACGGTCCAGTTCACGACGTGCGCATCCCCTACCAGCAGAAGCGCATEST: gi|29945367|gb|CB815603.1|CB815603
genomic: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAGgtatgcatgc ... tgcggtgcagCATCTACGGTCCAGTTCACGACGTGCGCATCCCCTACCAGCAGAAGCGCAT
EST: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAG CATCTACGGTCCAGTTCACGACGTGCGCATCCCCTACCAGCAGAAGCGCATEST: gi|148951391|gb|EC897107.2|EC897107
genomic: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAGgtatgcatgc ... tgcggtgcagCATCTACGGTCCAGTTCACGACGTGCGCATCCCCTACCAGCAGAAGCGCAT
EST: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAG CATCTACGGTCCAGTTCACGACGTGCGCATCCCCTACCAGCAGAAGCGCAT
genomic: TTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAGgtatgcatgc ... tgcggtgcagCATCTACGGTCCAGTTCACGACGTGCGCATCCCCTACCAGCAGAAGCGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGACTTCGCTAGCATGATGAACCCCGGCTCGCGCCAGATTTATCTGACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTATTTCAGgtatgcatgcacacacggtaatgtgatgctccaatctttgcttccgtagaaccccgtttggttggctgacttgaccatcgcgcttcttgttggcaatgcggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA