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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagcatttgtgccgcttgcaatacttagcttctgctaggtgtttaatttggtggactgatcgatgtgaatgctctattcctgctcgcag

Basic information

species Zea mays
transcript GRMZM2G003076_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003076_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g39220.1 (Oryza sativa), 5'ss of exon 2
GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagcatttgtgccgcttgcaatacttagcttctgctaggtgtttaatttggtg--------gactgatcgatgtgaatgct--ctattcctgctcgcag
|||||||| ||||||||||| ||||||||||| || || || |||||||| || |||||||||||||| || |||||||| ||||||||||||| |  |  |  |||     ||    | ||| || | || ||| ||||   | ||||         || ||||| |||  ||||||   | ||  || | ||||
GTCCAATTGATCAGAATCGAATGTAGGGTGCCCGAATACGGGTGGACAACACAAAAGGTGTTCCATTTCCTCAACTTCCTCGTGAACGGCGgtgggtaacgagctgtttttttttt--ttctttgcctatgttagatgttcggtctggtactcttgtcgattgatctatgacaatgcttgttgtttgtgtttgcag

upper sequence: GRMZM2G003076_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 2
GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagcatttgtgccgcttgcaatacttagcttctgctaggtgtt-taatttggtggac-tgatcgatgtgaatgctctattcctgctcgcag
|| ||| |  |  | ||  | |  || || ||||||||||| ||||| ||||||||||||||||| ||||| || ||||| ||||| || |||      | || |     | |   ||| | ||  || ||||| |  || |||| |  ||    |  |   ||   ||| |||  | |     ||||
GTTCAACTGGTTCGGATACAATTGAGAGTCCCAGAGTATGGTTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgt----ttgtatctaa---gttcataattcatactttgtgctatggattataatcttttgtgtatttttattgaatatggtctcatgcgttctgcag

upper sequence: GRMZM2G003076_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ30530 (Selaginella moellendorffii), 5'ss of exon 2
GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagcatttgtgccgcttgcaatacttagcttctgctaggtgtttaatttggtggactgatcgatgtgaatgctctattcctgctcgcag
 | ||| | ||| | ||||||  | | || || |||||||| ||||| ||||||||||| |||||||| || || |||||||| || || ||||||     |||  | |  |||  |||  || | ||   ||      ||   ||| | |                                   
ATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACGACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAGgtgag-----attcttccatcttagaat-tttggattgatct-----cttcgcttgctag-----------------------------------

upper sequence: GRMZM2G003076_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ23006 (Selaginella moellendorffii), 5'ss of exon 2
GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagcatttgtgccgcttgcaatacttagcttctgctaggtgtttaatttggtggactgatcgatgtgaatgctctattcctgctcgcag
 | ||| | ||| | ||||||  | | || || |||||||| ||||| ||||||||||| |||||||| || || |||||||| || || ||||||     |||  | |  |||  ||   || | ||   ||      ||  |||| | |                                   
ATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACCACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAGgtgag-----attcttccatcttagaac-tttggattgatct-----cttcgtttgctag-----------------------------------

upper sequence: GRMZM2G003076_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ15891 (Selaginella moellendorffii), 5'ss of exon 2
GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagcatttgtgccgcttgcaatacttagcttctgctaggt-gtttaatttggtggactgatcgatgtgaatgctctattcctgctcgcag
 ||||| |  | |||||  |     ||||||| |||||||| |||||||||||||| ||||||||| | || || ||| |||| || || |||||   |   ||  |     || |  |  |   ||| |  |   | || |  || | |                                     
ATCCAACTCGTTAGAATACAAATCCGGGTGCCGGAGTATGGCTGGACAACGCAGAAAGTGTTCCATCTCCTCAATTTCTTTGTAAATGGAGgtgaa--aagtttcatatttttttctctcatcctcttgttttgattcgtcttcttcgatcag----------------------------------

upper sequence: GRMZM2G003076_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ33253 (Selaginella moellendorffii), 5'ss of exon 2
GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagcatttgtgccgcttgcaatacttagcttctgctaggtgtttaatttggtggactgatcgatgtgaatgctctattcctgctcgcag
 ||||| |  | |||||  |     ||||||| |||||||| |||||||||||||| ||||||||| | || || ||| |||| || || |||||         | |      |   || ||    || || |  || ||    | | |                                     
ATCCAACTCGTTAGAATACAAATCCGGGTGCCGGAGTATGGCTGGACAACGCAGAAAGTGTTCCATCTCCTCAATTTCTTTGTAAATGGAGgtgaaaagtttcattttttttctctcatcctcttgttttgattcgtcttc--ctcgatcag----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211382284|gb|FL169263.1|FL169263
EST:     ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG                         TGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG
genomic: ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagc ... ctgctcgcagTGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG
EST: gi|149112231|gb|EE295139.2|EE295139
EST:     ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG                         TGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG
genomic: ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagc ... ctgctcgcagTGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG
EST: gi|149081139|gb|EE170248.2|EE170248
EST:     ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG                         TGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG
genomic: ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagc ... ctgctcgcagTGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG
EST: gi|149109085|gb|EE189999.2|EE189999
EST:     ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG                         TGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG
genomic: ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagc ... ctgctcgcagTGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG