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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAACCAACTGCTGCATCGTTGGCCTATGGTTTCGAGAAGAAAAATAATGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagtgttccacctgttctttttttattgctttacttctgaaccacatggataataatcatctcttatcatggagataaagccttttgctttcaa...

Basic information

species Zea mays
transcript GRMZM2G001500_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G001500_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g14070.1 (Oryza sativa), 5'ss of exon 2
AATGAACCAACTGCTGCATCGTTGGCCTATGGTTTCGAGAAGAAAAATAATGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaagg-aagtgtt------ccacctgttctttttttattgctttacttctgaaccacatggataataatcatct----cttatcatggagataaagccttttgctttcaa
||||| || |||||||||||  | || |||||||| ||||||||||| || ||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |  | ||| |      |||     | |  |||| ||||  || | ||| | || | ||||       | ||    ||||||||     ||   |             
AATGAGCCGACTGCTGCATCCCTTGCTTATGGTTTTGAGAAGAAAAACAACGAAACGATTCTTGTGTTTGACTTGGGAGGCGGTACCTTTGATGTCTCTGgtatgttatgtgctagaacaccaaactgtttacttttcttgcactattactgtagcatagggatctcgtggacctgaatcttatcatacttctatgacag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91875430|gb|EB405387.1|EB405387
EST:     TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTG                         TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
genomic: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagt ... cgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
EST: gi|211323721|gb|FL059667.1|FL059667
EST:     TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTG                         TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
genomic: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagt ... cgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
EST: gi|211323718|gb|FL059664.1|FL059664
EST:     TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTG                         TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
genomic: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagt ... cgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
EST: gi|211323720|gb|FL059666.1|FL059666
EST:     TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTG                         TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
genomic: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagt ... cgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
EST: gi|211323719|gb|FL059665.1|FL059665
EST:     TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTG                         TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
genomic: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagt ... cgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
EST: gi|211323722|gb|FL059668.1|FL059668
EST:     TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTG                         TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
genomic: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagt ... cgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA