1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ACGGCGTCTCCGTGGACGACCAGGACGACCCCAACCAGCGGCCCAGCAAGAAGAAGCGCTACCACCGCCACACCCTGCATCAGATCCAGGAGATGGAAGCgtaatgaccctcatgcatgctatactacatgcttctctttagtttgttctcgatctcctcgtcattaattctacatggattgttcttgaaatgcattggt...
species | Zea mays |
transcript | GRMZM2G001289_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGCGCTACCACCGCCACACCCTGCATCAGATCCAGGAGATGGAAGC TTTCTTCAAGGAATGCCCGCACCCGGACGACTAGCAGCGTCA-GGAGCTGAEST: gi|71449408|gb|DR830458.1|DR830458
genomic: AAGAAGCGCTACCACCGCCACACCCTGCATCAGATCCAGGAGATGGAAGCgtaatgaccc ... ggatggccagTTTCTTCAAGGAATGCCCGCACCCGGACGACAAGCAGCG-CAAGGAGCTGA
EST: AAGAAGCGCTACCACCGCCACACCCTGCATCAGATCCAGGAGATGGAAGC TTTCTTCAAGGAATGCCCGCACCCGGACGACAAGCAGCGCAAGGAGCTGAG
genomic: AAGAAGCGCTACCACCGCCACACCCTGCATCAGATCCAGGAGATGGAAGCgtaatgaccc ... ggatggccagTTTCTTCAAGGAATGCCCGCACCCGGACGACAAGCAGCGCAAGGAGCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGCGTCTCCGTGGACGACCAGGACGACCCCAACCAGCGGCCCAGCAAGAAGAAGCGCTACCACCGCCACACCCTGCATCAGATCCAGGAGATGGAAGCgtaatgaccctcatgcatgctatactacatgcttctctttagtttgttctcgatctcctcgtcattaattctacatggattgttcttgaaatgcattggt
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG