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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGCAGCTGTTTGTCGGACCTGGAGAGAAATCTGCAAAGAGATCGTTAAGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgctctctttgatccttatatgtttcatttccgtttttgtttcataattttatgttatatataacttgtatctgggaagcggtatttttaaaacaaagaaaaccaagaatacagatgaaccactttatctatacattaatactgttttgttggccatattcag

Basic information

species Zea mays
transcript GRMZM2G001272_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32845252|gb|CD984933.1|CD984933
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAGTGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|32845238|gb|CD984919.1|CD984919
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAGTGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|32845629|gb|CD985310.1|CD985310
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAGTGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|50335303|gb|CO530429.1|CO530429
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|149077539|gb|EE166236.2|EE166236
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|148955113|gb|EC900627.2|EC900627
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|33098000|gb|CF057960.1|CF057960
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAGTGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|93014712|gb|EB640232.1|EB640232
EST:     GAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: GAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|148965634|gb|EE016482.2|EE016482
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|149111854|gb|EE191009.2|EE191009
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|211530040|gb|FL043874.1|FL043874
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|149029779|gb|EE286269.2|EE286269
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|149044467|gb|EE047589.2|EE047589
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|211530043|gb|FL043877.1|FL043877
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|149101708|gb|EE187845.2|EE187845
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|211530044|gb|FL043878.1|FL043878
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAAC-ATCCAATGCTTCATCAAAGGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|149074592|gb|EE162995.2|EE162995
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|86468999|gb|DY235369.1|DY235369
EST:     GAATCCGGAGTTCTCTGGAAAAATCATCTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAGGGGATAAATCT
genomic: GAATCCAGAGTTCTCTGGAAAAATCA-CTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|78085094|gb|DV513487.1|DV513487
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|149076331|gb|EE164946.2|EE164946
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTACCCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|32845394|gb|CD985075.1|CD985075
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAGTGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|148945477|gb|EC890712.2|EC890712
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATC
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCC-TGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATC
EST: gi|50333305|gb|CO528431.1|CO528431
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|148940279|gb|EC885058.2|EC885058
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|32845562|gb|CD985243.1|CD985243
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAGTGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
EST: gi|149014539|gb|EE044173.2|EE044173
EST:     AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAG                         CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: AGAATCCAGAGTTCTCTGGAAAAATCACTTTTCCTGTGTCCTTAAAGCAGgtgatggtgc ... ccatattcagCCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCT