1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAGAGGAAGTTGTGGTGGAGGATGAGGAGGAGGAAGATGAGGACGATGACGATGATGACAAGGATGATGATGAACTCGATGgtgagttattatgatctgagaatgtctctctagtgttattcaggttgataatatgtgaaatagggacaaaagaaatgtcttgatatcttggagcttgtag...
species | Zea mays |
transcript | GRMZM2G000923_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGATGATGATGAACTCGATG GGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCGCAEST: gi|166559422|gb|EG319037.1|EG319037
genomic: GGATGATGATGAACTCGATGgtgagttatt ... cgacaagaagGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCGCA
EST: GAAGATGAGGACGATGACGATGATGACAAGGATGAATGATGAACTCGATG GGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAEST: gi|78025838|gb|DV494225.1|DV494225
genomic: GAAGATGAGGACGATGACGATGATGACAAGGATG-ATGATGAACTCGATGgtgagttatt ... cgacaagaagGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGA
EST: ATGACAAGGATGATGATGAACTCGATGAAGEST: gi|60396469|gb|DN229338.1|DN229338
genomic: ATGACAAGGATGATGATGAACTCGAT---Ggtgagttatt ... cgacaaga
EST: CGATGACGATGATGACAAGGATGATGATGAACTCGATG GGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCGCAEST: gi|60348322|gb|DN215295.1|DN215295
genomic: CGATGACGATGATGACAAGGATGATGATGAACTCGATGgtgagttatt ... cgacaagaagGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCGCA
EST: GACAAGGATGATGATGAACTCGATG GGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCGCAEST: gi|60352329|gb|DN219302.1|DN219302
genomic: GACAAGGATGATGATGAACTCGATGgtgagttatt ... cgacaagaagGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCGCA
EST: CGATGACGATGATGACAAGGATGATGATGAACTCGATGAAGEST: gi|78025744|gb|DV494131.1|DV494131
genomic: CGATGACGATGATGACAAGGATGATGATGAACTCGAT---Ggtgagttatt ... cgacaaga
EST: ATGACGATGATGACAAGGATGATGATGAACTCGATG GGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCGCAEST: gi|31910389|gb|CD651399.1|CD651399
genomic: ATGACGATGATGACAAGGATGATGATGAACTCGATGgtgagttatt ... cgacaagaagGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCGCA
EST: GATGACAAGGATGATGATGAACTCGATG GGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCGCAEST: gi|120480064|gb|EH210716.1|EH210716
genomic: GATGACAAGGATGATGATGAACTCGATGgtgagttatt ... cgacaagaagGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCGCA
EST: ATGACAAGGATGATGATGAACTCGATG GGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCGCA
genomic: ATGACAAGGATGATGATGAACTCGATGgtgagttatt ... cgacaagaagGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAGGAAGTTGTGGTGGAGGATGAGGAGGAGGAAGATGAGGACGATGACGATGATGACAAGGATGATGATGAACTCGATGgtgagttattatgatctgagaatgtctctctagtgttattcaggttgataatatgtgaaatagggacaaaagaaatgtcttgatatcttggagcttgtag
- - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG