1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAGAGGAAGTTGTGGTGGAGGATGAGGAGGAGGAAGATGAGGACGATGACGATGATGACAAGGATGATGATGAACTCGATGgtgagttattatgatctgagaatgtctctctagtgttattcaggttgataatatgtgaaatagggacaaaagaaatgtcttgatatcttggagcttgtag...
species | Zea mays |
transcript | GRMZM2G000923_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGATGACGATGATGACAAGGATGATGATGAACTCGATG AAGGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCEST: gi|31910389|gb|CD651399.1|CD651399
genomic: CGATGACGATGATGACAAGGATGATGATGAACTCGATGgtgagttatt ... tcgcgacaagAAGGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCC
EST: GATGACAAGGATGATGATGAACTCGAT- --GGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCEST: gi|60348322|gb|DN215295.1|DN215295
genomic: GATGACAAGGATGATGATGAACTCGATGgtgagttatt ... tcgcgacaagAAGGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCC
EST: GACAAGGATGATGATGAACTCGAT- --GGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCEST: gi|78025744|gb|DV494131.1|DV494131
genomic: GACAAGGATGATGATGAACTCGATGgtgagttatt ... tcgcgacaagAAGGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCC
EST: ATGACGATGATGACAAGGATGATGATGAACTCGAT- --GGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCEST: gi|78025838|gb|DV494225.1|DV494225
genomic: ATGACGATGATGACAAGGATGATGATGAACTCGATGgtgagttatt ... tcgcgacaagAAGGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCC
EST: ATGACAAGGATGATGATGAACTCGATG AAGGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCEST: gi|24766680|gb|CA401827.1|CA401827
genomic: ATGACAAGGATGATGATGAACTCGATGgtgagttatt ... tcgcgacaagAAGGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCC
EST: GGATGATGATGAACTCGAT- --GGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCEST: gi|60396469|gb|DN229338.1|DN229338
genomic: GGATGATGATGAACTCGATGgtgagttatt ... tcgcgacaagAAGGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCC
EST: CGATGACGATGATGACAAGGATGATGATGAACTCGAT- --GGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCC
genomic: CGATGACGATGATGACAAGGATGATGATGAACTCGATGgtgagttatt ... tcgcgacaagAAGGGGATGCCAGTGGCAAGTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAGGAAGTTGTGGTGGAGGATGAGGAGGAGGAAGATGAGGACGATGACGATGATGACAAGGATGATGATGAACTCGATGgtgagttattatgatctgagaatgtctctctagtgttattcaggttgataatatgtgaaatagggacaaaagaaatgtcttgatatcttggagcttgtag
- - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaaa