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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGCGAGCAGCGATCATGGTAGAGCTGCACCATTCGTCCAAGCAGTCGCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgcttctcctttctactctactatatccttcacactccctccctctgcatttctctcttgctactactcgtaactgaatgcaaagacagcaca...

Basic information

species Zea mays
transcript GRMZM2G000842_T04
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88758005|gb|DY542146.1|DY542146
EST:     GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT                         GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
EST: gi|71435856|gb|DR816906.1|DR816906
EST:     GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT                         GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
EST: gi|71439738|gb|DR820788.1|DR820788
EST:     GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT                         GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
EST: gi|91869980|gb|EB400639.1|EB400639
EST:     GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT                         GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
EST: gi|76015224|gb|DT942394.1|DT942394
EST:     GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT                         GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA