1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACGCTCTGAAGATTGTTGTGTCTCAGTGCAAGCCAAAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGAgtaataagcctttctgtgtcttagtcctcttgattgctactttcttgctaatttgcatctttacgtgggctcactgttggaaacag
species | Zea mays |
transcript | AC233895.1_FGT001 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAAGTCAAGATTGTTGACTTTTGCGAGAAGGGTGACTCTTTCATAAGAGA GCAAACTGGGAATGTTTACAAGAATGCAAAGAGGAAGATTGAAAGGGGTATEST: gi|87155627|gb|DY400416.1|DY400416
genomic: AAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGAgtaataagcc ... ttggaaacagGCAAACTGGGAATGTTTACAAGAACGCAAAGAGGAAGATTGAAAGGGGTAT
EST: AAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGA GCAAACTGGGAATGTTTACAAGAACGCAAAGAGGAAGATTGAAAGGGGTATEST: gi|22819488|gb|BU499578.1|BU499578
genomic: AAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGAgtaataagcc ... ttggaaacagGCAAACTGGGAATGTTTACAAGAACGCAAAGAGGAAGATTGAAAGGGGTAT
EST: AAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGA GCAAACTGGGAATGTTTACAAGAACGCAAAGAGGAAGATTGAAAGGGGTATEST: gi|87157252|gb|DY402041.1|DY402041
genomic: AAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGAgtaataagcc ... ttggaaacagGCAAACTGGGAATGTTTACAAGAACGCAAAGAGGAAGATTGAAAGGGGTAT
EST: AAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGA GCAAACTGGGAATGTTTACAAGAACGCAAAGAGGAAGATTGAAAGGGGTATEST: gi|26559653|gb|CA831888.1|CA831888
genomic: AAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGAgtaataagcc ... ttggaaacagGCAAACTGGGAATGTTTACAAGAACGCAAAGAGGAAGATTGAAAGGGGTAT
EST: AAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGA GCAAACTGGGAATGTTTACAAGAACGCAAAGAGGAAGATTGAAAGGGGTATEST: gi|26559180|gb|CA831415.1|CA831415
genomic: AAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGAgtaataagcc ... ttggaaacagGCAAACTGGGAATGTTTACAAGAACGCAAAGAGGAAGATTGAAAGGGGTAT
EST: AAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGA GCAAACTGGGAATGTTTACAAGAACGCAAAGAGGAAGATTGAAAGGGGTAT
genomic: AAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGAgtaataagcc ... ttggaaacagGCAAACTGGGAATGTTTACAAGAACGCAAAGAGGAAGATTGAAAGGGGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGCTCTGAAGATTGTTGTGTCTCAGTGCAAGCCAAAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGAgtaataagcctttctgtgtcttagtcctcttgattgctactttcttgctaatttgcatctttacgtgggctcactgttggaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA