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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgccatctatatctgcgcttcctttatgtttcctgttgaaggatttcttcgtcttaggtgcgagtcgtcgattaatgtactgctgttatctgtgcgcag

Basic information

species Zea mays
transcript AC230013.2_FGT007
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC230013.2_FGT007 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g47660.1 (Oryza sativa), 5'ss of exon 2
TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgccatct----atatctgcgct-tcctttatgtttcctgttgaaggatttcttcgtcttaggtgcgagtcgtcgattaatgtactgctgttatctgtgcgcag
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||||    || |    ||  |  | |  |||| || ||  ||   ||| || | |   |||||  | |  ||||   |  ||    |   | ||| ||||
TGGTGGGGCGCGCGCTGCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtcatctcgtcattttcttgcgattttgtgggttttcttttttag---ttcatcttatctcgtgcggtttgctgattggggcgct----tgcccggtgtgcag

upper sequence: AC230013.2_FGT007 (Zea mays), 5'ss of exon 2
lower sequence: PP1S56_243V6.3 (Physcomitrella patens), 5'ss of exon 2
TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgccatctata---tctgcgcttcctttatgtttcctgttgaaggatttcttcgt-cttaggtgcgagtcgtcgattaatgtactgctgttatctgtgcgcag
|||| ||||| || ||||| ||  ||  | | |||  ||| |||   |||||||||||||| |||||||| |||||||| |||||||||   |||||||||| ||   |  |  | |   | |  |    ||| |    |  | | | |   |  ||| ||  ||| ||  |||    | |  | ||       |  |           
TGGTAGGGCGGGCCCTGCCCACTGCCACCAATGAGACCCCGAAGGCTTACCGCATGAAGCTATGGGCCACTAACGAAGTGCGCGCCAAGTCGAAGTTCTGgtaagtcactcttcaaaaaatatttgtgatcttcagaaattatatggtaacctggcttggtatttatgtctgagagagcaagaattgcctcctggccagt---------

upper sequence: AC230013.2_FGT007 (Zea mays), 5'ss of exon 2
lower sequence: PP1S74_193V6.2 (Physcomitrella patens), 5'ss of exon 2
TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgccatctatatctgcgcttcctttatgtttcctgttgaaggatttcttcgtcttaggtgcgagtcgtcgattaatgtactgctgttatctgtgcgcag
|||| ||||| || || || ||  |   | | |||   || |||   |||||||||||||||||||||||||||||||| |||||||||   ||||||||||  | ||     | ||  |    |||    |        | |   |  ||   |  |   ||       |     |||  || |    || | |   ||   | 
TGGTTGGGCGGGCCCTTCCTACCGCGACCAATGAGACACCTAAGGCTTACCGCATGAAGCTCTGGGCCACCAACGAAGTGCGCGCCAAGTCTAAGTTCTGgtatggtgt----tgtagtttaagttcgaaaagaaacgacgctctcgctttgtgtaattccagagaatgcttcgaaattggtggatctgtgctttagatgatga-

upper sequence: AC230013.2_FGT007 (Zea mays), 5'ss of exon 2
lower sequence: PP1S5_178V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgt---gagctgccatctatatctgcgcttcctttatgtttcctgttgaaggatttcttcgtcttaggtgcgagtcgtcgattaatg-tactgctgttatctgtgcgcag
|||||||||| || || || ||  |   | | |||  ||| ||    |||||||||||||| ||||| ||||| |||||||||||||||   || |||||||   |   ||     |   |||       | ||  |   |   ||| |  || ||||  |||   ||     | ||   || | |     |   |||  |||      
TGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGGCCCCTAAAGCTTACCGCATGAAGCTTTGGGCGACCAATGAAGTCCGCGCCAAGTCTAAATTCTGgtactgttgtgttgcttcagtcttgaaagtcattgaggagcacattgta--atgtctttctct-gtgtcttctttgtgtcttgaagacgacgaaattaggtgt------

upper sequence: AC230013.2_FGT007 (Zea mays), 5'ss of exon 2
lower sequence: EFJ38689 (Selaginella moellendorffii), 5'ss of exon 2
TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctg--ccatctatatctg-cgcttcctttatgtttcctgttgaaggatttcttcgtcttaggtgcgagtcgtcgattaatgtactgctgttatctgtgcgcag
|||| ||| | ||    || || |||| | | |||||||| ||||| ||||| |||||||||||||||  | ||||||| |||||||||  ||| ||||||||||  |   |   |  |||   || | | |||   ||| || | ||    |||     ||||     | ||                                   
TGGTCGGGAGAGCTACTCCCACTCCCGACAATGAGCACCCAAAGATGTACCGGATGAAGCTCTGGGCCGGCGACGAAGTGCGCGCCAAGTCCAAATTCTGgtgagtggagtcgattggatcgatcgatccatttccattttctctcga----tttacctttctttcactctag-----------------------------------

upper sequence: AC230013.2_FGT007 (Zea mays), 5'ss of exon 2
lower sequence: EFJ31458 (Selaginella moellendorffii), 5'ss of exon 2
TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctg--ccatctatatctg-cgcttcctttatgtttcctgttgaaggatttcttcgtcttaggtgcgagtcgtcgattaatgtactgctgttatctgtgcgcag
|||| ||  | ||    || || |||| | | |||||||| ||||| ||||| |||||||||||||||  | ||||||| |||||||||  ||| ||||||||||  |   |   |  |||   || | | |||   ||| || | ||    |||     ||||     | ||                                   
TGGTCGGAAGAGCTACTCCCACTCCCGACAATGAGCACCCAAAGATGTACCGGATGAAGCTCTGGGCCGGCGACGAAGTGCGCGCCAAGTCCAAATTCTGgtgagtcgagtcgattggatcgatcgatccatttccattttctctcga----tttacctttctttcactctag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5688510|gb|AI941525.1|AI941525
EST:     CACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|5932717|gb|AW057078.1|AW057078
EST:     ACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: ACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|15100313|gb|BI396104.1|BI396104
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|211263956|gb|FL049653.1|FL049653
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|18384240|gb|BM417439.1|BM417439
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|32807595|gb|CD959829.1|CD959829
EST:     CGCATAAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTA
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTA
EST: gi|211268823|gb|FL049675.1|FL049675
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|29130285|gb|CB380989.1|CB380989
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|5343072|gb|AI795482.1|AI795482
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|31405721|gb|CD484453.1|CD484453
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|211261521|gb|FL049637.1|FL049637
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|29544754|gb|CB605362.1|CB605362
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|211261516|gb|FL049632.1|FL049632
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|9794359|gb|BE552667.1|BE552667
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|5398753|gb|AI812218.1|AI812218
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|211259082|gb|FL049626.1|FL049626
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|89757074|gb|DY686828.1|DY686828
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCCAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|18383730|gb|BM416930.1|BM416930
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|31358983|gb|CD443340.1|CD443340
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|20301341|gb|BQ164284.1|BQ164284
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAATAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|15313528|gb|BI478745.1|BI478745
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|211268834|gb|FL049686.1|FL049686
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|211263947|gb|FL049644.1|FL049644
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|29130286|gb|CB380990.1|CB380990
EST:     GCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: GCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|22542281|gb|BU092719.1|BU092719
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
EST: gi|18649600|gb|BM498419.1|BM498419
EST:     CATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT
genomic: CATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1186

TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 824

TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 521

TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 558

TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgcc ... ctgtgcgcagGTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgccatctatatctgcgcttcctttatgtttcctgttgaaggatttcttcgtcttaggtgcgagtcgtcgattaatgtactgctgttatctgtgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG