1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAAAGATTGCTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAGgtgcgtcgcaatcaaataataccccacctctgttttaaatttattggttaatctttcagttgattgatggttcagaccatgatagttggccatgaggatg...
species | Zea mays |
transcript | AC217401.3_FGT002 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAG GAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCAEST: gi|4753308|gb|AI657213.1|AI657213
genomic: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAGgtgcgtcgca ... ccttgtacagGAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCA
EST: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAG GAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCAEST: gi|149081712|gb|EE170865.2|EE170865
genomic: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAGgtgcgtcgca ... ccttgtacagGAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCA
EST: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAG GAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCAEST: gi|211165137|gb|FK981040.1|FK981040
genomic: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAGgtgcgtcgca ... ccttgtacagGAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCA
EST: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAG GAAGATGTTGATCTCATGAAAAEST: gi|211165135|gb|FK981038.1|FK981038
genomic: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAGgtgcgtcgca ... ccttgtacagGAAGATGTTGATCTCATGAAAA
EST: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAG GAAGATGTTGATCTCATGAAAAGC-TAAATTTTGATGCATACCGGTTTTCAEST: gi|211165136|gb|FK981039.1|FK981039
genomic: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAGgtgcgtcgca ... ccttgtacagGAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCA
EST: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAG GAAGATGTTGAYCTCATGAAAAGC-TAAAATTTTGATGCAEST: gi|149014535|gb|EE044169.2|EE044169
genomic: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAGgtgcgtcgca ... ccttgtacagGAAGATGTTGATCTCATGAAAAGCCTAAA-TTTTGATGCA
EST: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAG GAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCA
genomic: CTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAGgtgcgtcgca ... ccttgtacagGAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGATTGCTGAAGACGCCAACGCAGATGTTACAACAGATGAATATCATCGCTACAAGgtgcgtcgcaatcaaataataccccacctctgttttaaatttattggttaatctttcagttgattgatggttcagaccatgatagttggccatgaggatg
- - - - CTGAAG
- - - - - TGAAGA
- - - - - - - - - - - GCAGAT
- - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccacc