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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGAGATCGGCGTCGGCTCGCCGCAGCAGAAGTTCACCGTCATCTTCGACACCGGCAGTTCCAACCTCTGGGTGCTGTCCTCCAAGTTCTACTTCTCGgtgcgtcctggttcctccccttgcctggccgaggttttcctttttcaggacttggatgtgttttgtgctaagactggagtgtgcttttgtgctgatgtgatgcag

Basic information

species Zea mays
transcript AC215300.3_FGT006
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC215300.3_FGT006 (Zea mays), 5'ss of exon 2
lower sequence: PP1S93_73V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGGGAGATCGGCGTCGGCTCGCCGCAGCAGAAGTTCACCGTCATCTTCGACACCGGCAGTTCCAACCTCTGGGTGCTGTCCTCCAAGTTCTACTTCTCGgtgcgtcctggttcctccccttgcctggccgaggttttcctttttcaggacttgg-atgtgttttgtgctaa-gactggagtgtgcttttgt-gctgatgtgatgcag
 || ||||||||  | || ||||| |  |||   ||| | ||||||||||||||||| || ||||| |||||||| | |||  |||||| |||||| |||||||||           || | |  |||       || |    |||||    |||    |  ||  |||    |  ||  ||  |     || ||||||    ||   
CGGAGAGATCGGAATAGGGTCGCCTCCCCAGCCCTTCGCTGTCATCTTCGACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtt-------tctccttgggatggttattaattcctgggttcagttggtggcgcatcattcatgccgctgtttgtggtcagaaaccgtagctgatcatgtgtc-