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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAATTGGAGGAGATACCATATCCGTGACAAGTGGAGTGGTCTCTAGGATAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAGgtacattttttttcctgaaattatgataacttcaaataaatctttttataaagatagatgttgcaagtgaagtaactattttgagaaaccatgacttatcggctcaccgacgtgtctaatacgggccttgtcttgttgatag

Basic information

species Zea mays
transcript AC212112.4_FGT002
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC212112.4_FGT002 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 5'ss of exon 2
TCCAATTGGAGGAGATACCATATCCGTGACAAGTGGAGTGGTCTCTAGGATAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAGgtacattttttttcctgaaattatgataacttcaaataaatctttttataaagatag-atgttgcaagtgaagtaactattttgagaaaccatgacttatcggctcaccgacgtgtctaatacgggccttgtcttgttgatag
||||||||||||||| || ||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |  ||  || |     | | ||  ||||    | | | | | ||||  ||||||  |    | ||| | |||| |        |  |||| | |                                       
TCCAATTGGAGGAGACACAATATCTGTGACAAGTGGGGTGGTCTCCAGGATAGAGATACTTTCATATGTTCACGGTTCTACAGAACTTCTAGGATTGCAGgttcattttctccccacaattc----tcatttagaatagtattatctgtgaggataacatgttgagaaatca-taagtcttttaacttttggggttttatggacag-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481372|gb|EY254286.1|EY254286
EST:     TAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAG                         ATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT
genomic: TAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAGgtacattttt ... ttgttgatagATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT
EST: gi|8102677|gb|AW927323.1|AW927323
EST:     TAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAG                         ATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT
genomic: TAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAGgtacattttt ... ttgttgatagATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT
EST: gi|166495282|gb|EG161199.1|EG161199
EST:     TCATGGTTCTACAGAACTTCTAGGATTGCAG                         ATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT
genomic: TCATGGTTCTACAGAACTTCTAGGATTGCAGgtacattttt ... ttgttgatagATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT