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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTACCGTTTTTTCCTGAACAAGGAGTATGGAAGCCTATTTTCGTCTCTAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCTGTTGTGGAAAAGgtgctatacgttcacttatctaatcactgaactgatacctagcgaatgatctgacacataatgctaatatatccctgtgttctaaatacattgctttttt...

Basic information

species Zea mays
transcript AC197667.3_FGT002
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064139_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g07390.1 (Oryza sativa), 5'ss of exon 5
GTGGTACCGTTTTTTCCTGAACAAGGAGTATGGAAGCCTATTTTCGTCTCTAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCTGTTGTGGAAAAGgtgctatacgttcacttatctaatcactgaactgatacctagcgaatgatctgacacataatgctaatatatccctgtgttctaaatacattgctttttt
 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||||||||| |||||||||||||| || ||  ||| ||||| || |  |  ||  ||||| ||| |  |  |   || |    || |    | ||                           
ATGGTACCGATTTTTCCTGAACAAGGAGTATGGAAGCCTATTTTCGTCTCTAACCACTGGATTATACCTTACTTTCAAGTTGACATCAGTTGTGGAAAAGgtactgtaacttcccttatttagtttcgtaagggatacttagtgcctcctaaaactccagctgtttccttgtcag-------------------------

upper sequence: GRMZM2G064139_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv08s0056g00440.t01 (Vitis vinifera), 5'ss of exon 5
GTGGTACCGTTTTTTCCTGAACAAGGAGTATGGAAGCCTATTTTCGTCTCTAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCTGTTGTGGAAAAGgtgctatacgttc---acttatctaatcactgaactgataccta-gcgaatgatctgacacataatgctaatatatccctgtgttctaaat----------acattgctttttt-------------------------------------------------------------
 ||||| ||||||||| ||||||| || ||||| ||||||||||| || ||||  || || |||||| | ||||||||| | || |||||||| || |||||   ||    ||   |  ||  || ||  || | |||| |||  |    || | |  |      |  |  | | | |||   || |||            | |||   || ||                                                             
CTGGTATCGTTTTTTCTTGAACAAAGAATATGGGAGCCTATTTTCATCACTAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgttctcttgatgtaaatattctatggattgatgcctctgtttctgcttttgctttgggtctttttttcttcctaatttttaatcctcctcatgaagattaacttcttggttctgtggatcttatgcttatttttttcctccctctctaccttgattggtgatgttcag