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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGTCCTTTGGAACCCAAGGGTGGAAGAAAGACGGAGTGCAGATTCCTGCTAGCGACAAAGTTTACGAGTATATCCTCTTCCGGGGAACTGATATCAAGgtacgtggaaccatctacggggctcctgatgcagtgctacttccattgtcgacaattgagtgttgttcaacggctcaacgctttatgttggtgcctggtc...

Basic information

species Zea mays
transcript AC190588.3_FGT003
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC190588.3_FGT003 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g02090.1 (Oryza sativa), 5'ss of exon 2
GCGGTCCTTTGGAACCCAAGGGTGGAAGAAAGACGGAGTGCAGATTCCTGCTAGCGACAAAGTTTACGAGTATATCCTCTTCCGGGGAACTGATATCAAGgtacgtggaaccatctacggggctcctgatgcagtgctacttccattgtcgacaattgagtgttgttcaacggctcaacgctttatgttggtgcctggtc
 || || ||||||||| ||||| | |||||||| |||||||| ||||||||||||  ||||||||| ||||| || || |||||||||| |||||||||||||  | |    ||  || ||    ||| |||| |  |  ||       | |    ||  |||  ||  |       |||| |    |   |  || || 
TCGATCATTTGGAACCGAAGGGCGCAAGAAAGATGGAGTGCAAATTCCTGCTAGCACCAAAGTTTATGAGTACATACTTTTCCGGGGAAGTGATATCAAGgtatattgctttatgaacaggatcactggtgcaattttgatttgtgaaaccattcatgcttgtacttgtataaacgcacgcgtggaatatttctcttgtg

upper sequence: AC190588.3_FGT003 (Zea mays), 5'ss of exon 2
lower sequence: AT1G26110.2 (Arabidopsis thaliana), 5'ss of exon 2
GCGGTCCTTTGGAACCCAAGGGTGGAAGAAAGACGGAGTGCAGATTCCTGCTAGCGACAAAGTTTACGAGTATATCCTCTTCCGGGGAACTGATATCAAGgtacgtggaaccatctacggggctcctgatgcagtgctacttccattgtcgacaattgagtgttgttcaacggctcaacgctttatgttggtgcctggtc
 || || ||||||||  ||||  |||| ||||| ||    ||  ||||| | || ||||||||||||||||| ||  | ||||| ||||||||||||||||||          ||  | ||  |    ||||  |  |||||| || ||    |       | | ||  ||      |   ||  ||||| ||   |   
TCGATCATTTGGAACTGAAGGAAGGAAAAAAGATGGTCCACAAGTTCCTCCAAGTGACAAAGTTTACGAGTACATATTGTTCCGTGGAACTGATATCAAGgtat---------tcagcaggatt----atgc--taatacttctat-gtaagtagcctgccgattttgtac--tctgattgttcttgttgttggtag---

upper sequence: AC190588.3_FGT003 (Zea mays), 5'ss of exon 2
lower sequence: PP1S35_195V6.1 (Physcomitrella patens), 5'ss of exon 2
GCGGTCCTTTGGAACCCAAGGGTGGAAGAAAGACGGAGTGCAGATTCCTGCTAGCGACAAAGTTTACGAGTATATCCTCTTCCGGGGAACTGATATCAAGgtacgtggaaccatctacggggctcctgatgcagtgctacttccattgtcgacaattgagtgttg-ttcaacggctcaacgctttatgttggtgc-ctggtc--------------------------------------------------
| | || || |||||  | ||| | ||||| || ||    ||||| |||||||||||||||||||| || |||||| | ||||| ||| | |||||||||||  |    |   |     ||  |     | ||   |||  |    || |    ||  | | ||  ||| ||||      | |   |    |||  ||  |                                                   
GAGATCATTCGGAACAGAGGGGCGTAAGAAGGATGGCCCCCAGATCCCTGCTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAGgttagaattagggttctaaggattt----tacacctctagataagctgccttagatgaattcttacttctacgggattgtgttgagtagcagtgtactcatgcccaagaaccatgttatttggactgatcttgcctcgtattatgttatcag