1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GGCTCAGATCACTGCAATTCACCTGATAATTGGGACCCTTCAGCGGATGAATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattcttgttttatggctagttcatttccccctcaatccccccttcaatccccatggggaatgggtgtatccaaagtagccttgtagcctcgcgagacctgttattgcatgaatcagctttctttaaatgaagtgctagcctctcttgtaaattacattgctactgctttctgcag
species | Zea mays |
transcript | GRMZM5G844195_T03 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTCTATGCGEST: gi|31356855|gb|CD441212.1|CD441212
genomic: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTCTATGCGEST: gi|67012219|gb|CO440968.1|CO440968
genomic: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCGEST: gi|211321315|gb|FL043264.1|FL043264
genomic: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: ATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCGEST: gi|18964320|gb|BM660937.1|BM660937
genomic: ATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTCTATGCGEST: gi|31355991|gb|CD440348.1|CD440348
genomic: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: T-TATTTGGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTCTATGCGEST: gi|211321314|gb|FL043263.1|FL043263
genomic: TATATTTGGGG-TGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: ATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCGEST: gi|31353910|gb|CD438267.1|CD438267
genomic: ATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTCTATGCGEST: gi|67014984|gb|CO443733.1|CO443733
genomic: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCGEST: gi|31355451|gb|CD439808.1|CD439808
genomic: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTCTATGCGEST: gi|211321316|gb|FL043265.1|FL043265
genomic: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: ATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCGEST: gi|211321311|gb|FL043260.1|FL043260
genomic: ATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: ATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCGEST: gi|78088719|gb|DV517112.1|DV517112
genomic: ATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCGEST: gi|211321310|gb|FL043259.1|FL043259
genomic: ATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
EST: ATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
genomic: ATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattc ... ctttctgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTATATGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTCAGATCACTGCAATTCACCTGATAATTGGGACCCTTCAGCGGATGAATATATTTGGGGTGGAAAATAGAGACACCCTCACTCACAAGACAACAGGGgtaatgattcttgttttatggctagttcatttccccctcaatccccccttcaatccccatggggaatgggtgtatccaaagtagccttgtagcctcgcgagacctgttattgcatgaatcagctttctttaaatgaagtgctagcctctcttgtaaattacattgctactgctttctgcag
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