1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GAGGGATGATGTCGTAGTTCCCTGCGGCAAGCCGGTGCCATCATCAATTAGGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAGgttcacaagtgttctttttaccctatctatccctttgcttttccagtgctgcgggttcataggggatgtgcacactgaccttttgtgaaaacctgtgtgtgtgtgccatcag
species | Zea mays |
transcript | GRMZM5G831712_T01 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAG GTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTGEST: gi|61119038|gb|DN559999.1|DN559999
genomic: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAGgttcacaagt ... gtgccatcagGTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTG
EST: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAG GTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTGEST: gi|60351643|gb|DN218616.1|DN218616
genomic: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAGgttcacaagt ... gtgccatcagGTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTG
EST: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAG GTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTGEST: gi|60394841|gb|DN227710.1|DN227710
genomic: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAGgttcacaagt ... gtgccatcagGTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTG
EST: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAG GTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTGEST: gi|211088585|gb|FL093444.1|FL093444
genomic: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAGgttcacaagt ... gtgccatcagGTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTG
EST: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAG GTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTGEST: gi|8516247|gb|BE122975.1|BE122975
genomic: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAGgttcacaagt ... gtgccatcagGTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTG
EST: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAG GTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTGEST: gi|9028469|gb|BE238464.1|BE238464
genomic: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAGgttcacaagt ... gtgccatcagGTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTG
EST: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAG GTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTGEST: gi|60350335|gb|DN217308.1|DN217308
genomic: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAGgttcacaagt ... gtgccatcagGTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTG
EST: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAG GTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTGEST: gi|94475979|gb|EB704937.1|EB704937
genomic: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAGgttcacaagt ... gtgccatcagGTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTG
EST: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAG GTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTG
genomic: GGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAGgttcacaagt ... gtgccatcagGTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGGATGATGTCGTAGTTCCCTGCGGCAAGCCGGTGCCATCATCAATTAGGAGCTCTGAACTCATGTACAATGAGTACATCGTCTACAACACATCCCAGgttcacaagtgttctttttaccctatctatccctttgcttttccagtgctgcgggttcataggggatgtgcacactgaccttttgtgaaaacctgtgtgtgtgtgccatcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT