Sequence
atgc intronic sequence ATGC exonic sequenceGGCTCAAATCACTGCAATTCACCTGATAATTGGGACCCTTCAGCGGATGAATATATTTGGGGTGGAAAATAGAGACACTCTCACTCACAAGACAACAGGGgtaatggttcttgttttatgtctagtttggatccatgattcttgttcggttgcaggtggattggaggggattgagggggattatatccctgcctatttaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 19
GGCTCAAATCACTGCAATTCACCTGATAATTGGGACCCTTCAGCGGATGAATATATTTGGGGTGGAAAATAGAGACACTCTCACTCACAAGACAACAGGGgtaatggttcttgttttatgtctagtttggatccatgattcttgttcggttgca-----------ggtggattggaggggattgagggggattatatc--cctgcctatttaa-------
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GGCTCAAATCACTGCAATTCATCTTATAATTGGAACCCTTCAACGGATGAATATATTCGGGGTTGAAAATAGAGATACCCTGACTCACAAGACAACAGGGgtaacaattactatgctgtttccttattgaattatgtttttctcttctctctctctctctctctctctcaaatcagtctcttctatgcacataataacatcctgctgaataattgtgcag
upper sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 19
lower sequence: EFJ27365 (Selaginella moellendorffii), 5'ss of exon 17
GGCTCAAATCACTGCAATTCACCTGATAATTGGGACCCTTCAGCGGATGAATATATTTGGGGTGGAAAATAGAGACACTCTCACTCACAAGACAACAGGGgtaatggttcttgttttatgtctagtttggatccatgattcttgttcggttgcaggtggattggaggggattgagggggattatatccctgcctatttaa
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AGCACAAATCACGGCAATGCACCTGATCATCGGGACATTGCAGAGAACTACTGTCTTTGGGGTAGAAAACAGAGACACGCTCACTCACAAAGCTACAGGGgtaa--gctttgctcgtactttcagaccgaatc--tcactctcgct---ttgcag---------------------------------------------
upper sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 19
lower sequence: EFJ33136 (Selaginella moellendorffii), 5'ss of exon 17
GGCTCAAATCACTGCAATTCACCTGATAATTGGGACCCTTCAGCGGATGAATATATTTGGGGTGGAAAATAGAGACACTCTCACTCACAAGACAACAGGGgtaatggttcttgttttatgtctagtttggatccatgattcttgttcggttgcaggtggattggaggggattgagggggattatatccctgcctatttaa
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AGCACAAATCACGGCAATGCACCTGATCATCGGGACATTGCAGAGAACTACTGTCTTTGGGGTAGAAAACAGAGACACGCTCACTCACAAAGCTACAGGGgtaa--gctttgctcgtactttcagaccgaatc--tcactctcgctc--ttgcag---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14203142|gb|BG836819.1|BG836819EST: ATATATTTGGGGTGGAAAATAGAGACACACTCACTCACAAGACAACAGGG TACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTTTATGCG
genomic: ATATATTTGGGGTGGAAAATAGAGACACTCTCACTCACAAGACAACAGGGgtaatggttc ... ttttatgcagTACTCAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTTTATGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTCAAATCACTGCAATTCACCTGATAATTGGGACCCTTCAGCGGATGAATATATTTGGGGTGGAAAATAGAGACACTCTCACTCACAAGACAACAGGGgtaatggttcttgttttatgtctagtttggatccatgattcttgttcggttgcaggtggattggaggggattgagggggattatatccctgcctatttaa
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