1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
ATACAATGGCGTGCTCTTGATGAGATCAATGCTGGGGTCTGTGATGGGATGACATACGATGAAATAAAGAAAAGTAAACCTGAAGAATATGAgtacgtgaattcactgatatcatgacattttatattaaaaaatccccctgatcactctgtcactcagaattttgttcagctgtgggtgtgtgttggtgct...
species | Zea mays |
transcript | GRMZM5G824405_T01 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: GAAAAGTAAACCTGAAGAATATGA ATCACGAAGAAAAGACAAGCTGAGGTATCGTTATCCGAGAGGAGAATCCTAEST: gi|84980594|gb|DW530943.1|DW530943
genomic: GAAAAGTAAACCTGAAGAATATGAgtacgtgaat ... accttctcagATCACGAAGAAAAGACAAGCTGAGGTATCGTTATCCGAGAGGAGAATCCTA
EST: GATGGGATGACATACGATGAAATAAAGAAAAGTAAACCTGAAGAATATGA ATCACGAAGAAAAGACAAGCTGAGGTATCGTTATCCGAGAGGAGAATCCTAEST: gi|78021450|gb|DV489837.1|DV489837
genomic: GATGGGATGACATACGATGAAATAAAGAAAAGTAAACCTGAAGAATATGAgtacgtgaat ... accttctcagATCACGAAGAAAAGACAAGCTGAGGTATCGTTATCCGAGAGGAGAATCCTA
EST: GATGGGATGACATACGATGAAATAAAGAAAAGTAAACCTGAAGAATATGA ATCACGAAGAAAAGACAAGCTGAGGTATCGTTATCCGAGAGGAGAATCCTAEST: gi|67015674|gb|CO444423.1|CO444423
genomic: GATGGGATGACATACGATGAAATAAAGAAAAGTAAACCTGAAGAATATGAgtacgtgaat ... accttctcagATCACGAAGAAAAGACAAGCTGAGGTATCGTTATCCGAGAGGAGAATCCTA
EST: GATGGGATGACATACGATGAAATAAAGAAAAGTAAACCTGAAGAATATGA ATCACGAAGAAAAGACAAGCTGAGGTATCGTTATCCGAGAGGAGAATCCTAEST: gi|67010650|gb|CO439399.1|CO439399
genomic: GATGGGATGACATACGATGAAATAAAGAAAAGTAAACCTGAAGAATATGAgtacgtgaat ... accttctcagATCACGAAGAAAAGACAAGCTGAGGTATCGTTATCCGAGAGGAGAATCCTA
EST: GATGGGATGACATACGATGAAATAAAGAAAAGTAAACCTGAAGAATATGA ATCACGAAGAAAAGACAAGCTGAGGTATCGTTATCCGAGAAGAGA-TCCTA
genomic: GATGGGATGACATACGATGAAATAAAGAAAAGTAAACCTGAAGAATATGAgtacgtgaat ... accttctcagATCACGAAGAAAAGACAAGCTGAGGTATCGTTATCCGAGAGGAGAATCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACAATGGCGTGCTCTTGATGAGATCAATGCTGGGGTCTGTGATGGGATGACATACGATGAAATAAAGAAAAGTAAACCTGAAGAATATGAgtacgtgaattcactgatatcatgacattttatattaaaaaatccccctgatcactctgtcactcagaattttgttcagctgtgggtgtgtgttggtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA