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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGAGACTGAAGAGACTACTGTCCGGAAACTTGAGGATGAAATAAAAGAATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAGgtaacatataatgtactgtacgtgtttctcaatcatgattttagaggtttacaccattcttagctccaccacgaagttcctgtttctttgttggatgatcaattttgccgcctaaactgacgaggattgtatttttctgtatattcgttgacag

Basic information

species Zea mays
transcript GRMZM2G341271_T02
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G341271_T02 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os10g41590.1 (Oryza sativa), 5'ss of exon 18
CTCTGAGACTGAAGAGACTACTGTCCGGAAACTTGAGGATGAAATAAAAGAATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAGgtaacatataatgtactgtacgtgtttctcaatcatgattttagaggtttacaccattcttagctccaccacgaagttcctgtttctttgttggatgatcaattttgccgcctaaactgacgaggattgtatttttctgtatattcgttgacag
||| || ||||||||||||||| | | ||| ||  | |||||||||||||||||||||| ||||||||||||||| || ||||| |||||||| |||||||| |      ||         | |   || |||||   | ||   | ||    | |||  |  ||  |||  || ||   | | |     ||  || || | ||   ||                                             
CTCAGAAACTGAAGAGACTACTATACAGAAGCTCCAAGATGAAATAAAAGAATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggccat--------tgggccactgaatcaacttattctggattatgtcgatttgtctctgaacctagatgtagatatctggg-atttaattattatttacacc---------------------------------------------

upper sequence: GRMZM2G341271_T02 (Zea mays), 5'ss of exon 19
lower sequence: AT1G55250.4 (Arabidopsis thaliana), 5'ss of exon 8
CTCTGAGACTGAAGAGACTACTGTCCGGAAACTTGAGGATGAAATAAAAGAATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAGgtaacatataatgtactgtacgtgtttctcaatcatgattttagaggtttacaccattcttagctccaccacgaagttcctgtttctttgttgg--atgatcaattttgccgcctaaactgacgaggattgtatttttctgtatattcgttgacag
 ||||||| || |||  || |  |   ||  ||  |||| ||| | ||  | |||||    || ||||| ||||||||||| ||||| ||||||||||||||||||       ||     | | | |||||        | |  |||   |||  ||  || | |   ||      |||   |  || |  |    || ||||||  |      | |     |    | | |  ||||| |               
TTCTGAGAGTGTAGAAGCTGCAATTGTGAGGCTCCAGGAAGAAGTTAAGAATTGCAAAAACATCCTCAAATGTGGTGTATGTTTTGATCGGCCTAAAGAGgtaacaatgctcataacaatcctatatctca-------ctgtcaaggcagacataatgattcgataatcct-----ttctcatcactgtcataatcatcatcaatagtcatatatcatgcatcagaaaatatcattttcag---------------

upper sequence: GRMZM2G341271_T02 (Zea mays), 5'ss of exon 19
lower sequence: AT1G55250.1 (Arabidopsis thaliana), 5'ss of exon 18
CTCTGAGACTGAAGAGACTACTGTCCGGAAACTTGAGGATGAAATAAAAGAATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAGgtaaca-----tataatg-tactgtacgtgtttctcaa--------tcatgattttagagg---tttacaccattcttagctccaccacgaa-gttcctgtttctt-tgttggatgatcaattttgccgcctaaactgacgaggattgtatttttctgtatattcgttgacag
 ||||||| || |||  || |  |   ||  ||  |||| ||| | ||  | |||||    || ||||| ||||||||||| ||||| ||||||||||||||||||      ||||   | || ||  |   | ||||        | ||||||  | |     ||  || || | | |    || ||  ||   || | | || |   |  ||  ||    ||| | ||  | |   || |    | | || ||    | |||  ||  |||
TTCTGAGAGTGTAGAAGCTGCAATTGTGAGGCTCCAGGAAGAAGTTAAGAATTGCAAAAACATCCTCAAATGTGGTGTATGTTTTGATCGGCCTAAAGAGgtaacaatgctcataacaatcctatatctcactgtcaaggcagacataatgattcgataatcctttctcatcactgtcataatcatcatcaatagtcatatatcatgcatcagaaaatatcattttcagcgcatatcaacaaccgcttt-ttgtttcaaacatt-atttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67022115|gb|CO450864.1|CO450864
EST:     AATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAG                         GTTGTGATCACCAAATGTTTCCACCTATTCTGCTCGCTATGCATCCAGAGA
genomic: AATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAGgtaacatata ... tcgttgacagGTTGTGATCACCAAATGTTTCCACCTATTCTGCTCGCTATGCATCCAGAGA
EST: gi|31364067|gb|CD448422.1|CD448422
EST:     AATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAG                         GTTGTGATCACCAAATGTTTCCACCTATTCTGCTCGCTATGCATCCAGAGA
genomic: AATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAGgtaacatata ... tcgttgacagGTTGTGATCACCAAATGTTTCCACCTATTCTGCTCGCTATGCATCCAGAGA
EST: gi|5688682|gb|AI941697.1|AI941697
EST:     AATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAG                         GTTGTGATCACCAAATGTTTCCACCTATTCTGCTCTCTATGCATCCAGAGA
genomic: AATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAGgtaacatata ... tcgttgacagGTTGTGATCACCAAATGTTTCCACCTATTCTGCTCGCTATGCATCCAGAGA
EST: gi|31352135|gb|CD436492.1|CD436492
EST:     AATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAG                         GTTGTGATCACCAAATGTTTCCACCTATTCTGCTCGCTATGCATCCAGAGA
genomic: AATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAGgtaacatata ... tcgttgacagGTTGTGATCACCAAATGTTTCCACCTATTCTGCTCGCTATGCATCCAGAGA
EST: gi|60346497|gb|DN213470.1|DN213470
EST:     AATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAG                         GTTGTGATCACCAAATGTTTCCACCTATTCTGCTCGCTATGCATCCAGAGA
genomic: AATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAGgtaacatata ... tcgttgacagGTTGTGATCACCAAATGTTTCCACCTATTCTGCTCGCTATGCATCCAGAGA