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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGTGAGAGTGCTAATGAGAAAGAAAAATCATATGGTTCCATTATGATGGAAAGGTTGACCAGTTCACCGAATGGTCGAATTGATCATGTGCTTCAGgtgataaaatttgctccactttgaccttatatttttggcttgttcctgcatgcttttatcgttcaatgagtttttttctttaatcttaaatctcaaatctatttttgcag

Basic information

species Zea mays
transcript GRMZM2G318860_T01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G318860_T02 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os08g01920.1 (Oryza sativa), 5'ss of exon 19
GGATGGTGAGAGTGCTAATGAGAAAGAAAAATCATATGGTTCCATTATGATGGAAAGGTTGACCAGTTCACCGAATGGTCGAATTGATCATGTGCTTCAGgtgataaaatttgctccactttgaccttatatttttggcttgttcctgcatgcttttatcgttcaatgagtttttttctttaatcttaaatctcaaatctatttttgcag
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GGACGTTGACAGCAATAATGAGAAAGAGAAGTCATATGGTTACATGATGATGGAAAGGCTGACAGGTTCACCAGATGGTCGGATTGACCATGTACTTCAGgttattaaacttttcctattaaagcaagttcaatttcactccctgctg-gtgtatgtatagg-cattgaaattgtgtactctgctttggatgtgaaaagtac--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075263|gb|DV503697.1|DV503697
EST:     TGGAAAGGTTGACCAGTTCACCGAATGGTCGAATTGATCATGTGCTTCAG                         GAGAAAACATTTCAGCATCCATATCTATCTGCTTTGGGAGCTCATAC
genomic: TGGAAAGGTTGACCAGTTCACCGAATGGTCGAATTGATCATGTGCTTCAGgtgataaaat ... atttttgcagGAGAAAACATTTCAGCATCCATATCTATCTGCTTTGGGAGCTCATAC
EST: gi|211270821|gb|FL023496.1|FL023496
EST:     TGGAAAGGTTGACCAGTTCACCGAATGGTCGAATTGATCATGTGCTTCAG                         GAGAAAACATTTCAGCATCCATATCTATCTGCTTTGGGAGCTCATAC
genomic: TGGAAAGGTTGACCAGTTCACCGAATGGTCGAATTGATCATGTGCTTCAGgtgataaaat ... atttttgcagGAGAAAACATTTCAGCATCCATATCTATCTGCTTTGGGAGCTCATAC
EST: gi|28873574|gb|CB329545.1|CB329545
EST:     TGGAAAGGTTGACCAGTTCACCGAATGGTCGAATTGATCATGTGCTTCAG                         GAGAAAACATTTCAGCATCCATATCTATCTGCTTTGGGAGCTCATAC
genomic: TGGAAAGGTTGACCAGTTCACCGAATGGTCGAATTGATCATGTGCTTCAGgtgataaaat ... atttttgcagGAGAAAACATTTCAGCATCCATATCTATCTGCTTTGGGAGCTCATAC
EST: gi|31354196|gb|CD438553.1|CD438553
EST:     TGGAAAGGTTGACCAGTTCACCGAATGGTCGAATTGATCATGTGCTTCAG                         GAGAAAACATTTCAGCATCCATATCTATCTGCTTTGGGAGCTCATAC
genomic: TGGAAAGGTTGACCAGTTCACCGAATGGTCGAATTGATCATGTGCTTCAGgtgataaaat ... atttttgcagGAGAAAACATTTCAGCATCCATATCTATCTGCTTTGGGAGCTCATAC