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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGAGAAGGAAGGTGGTAGCACGGATGAACTTGCTCTTGCGCTGTATGGAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAGgtaagttggacataagttacgtgagaccatatatgtcaaaatccacatggcacatggctcatttgtgtatacccttctccatcgaag

Basic information

species Zea mays
transcript GRMZM2G305007_T02
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305007_T01 (Zea mays), 5'ss of exon 20
lower sequence: LOC_Os04g54790.1 (Oryza sativa), 5'ss of exon 20
CATAGAGAAGGAAGGTGGTAGCACGGATGAACTTGCTCTTGCGCTGTATGGAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAGgtaag--------------ttggacat---aagttacgtgagacc---atatatgtcaaaatccacatggcacatggctcatttgtgtatacccttctccatcgaag-----------------------
    ||||| ||||||| ||| || |||||  || |||||| | | |||| |||||  ||||| ||||| ||  | ||||| |||||||||||||||||||||||              | ||| ||   ||   | ||  ||     || ||| |||  ||| || | | | |||     |  |  | |   ||    ||   | |                       
TGAGGAGAACGAAGGTGATAGTACAGATGAGATTTCTCTTGTGTTATATGAAATGAGATCTCTACCAGAGTTGTTGCCAGTACTTTCTGTCATTCCTGAGgtaagaatggaaatacaagtaggatatggaaatacaagtaggatggaaatgtatatcaggatcgacgttgaatatgatctgta-gcttttgagctctcacactaatgcagtaatgctcaccttaacgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78023163|gb|DV491550.1|DV491550
EST:     GAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAG                         CTTCCACCGGAGTCCCAACAGCAGTTGCTTCTTCTGCCAGCGGATTTAACC
genomic: GAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAGgtaagttgga ... tccatcgaagCTTCCACCGGAGTCCCAACAGCAGTTGCTTCTTCTGCCAGCGGATTTAACC
EST: gi|211147087|gb|FL480722.1|FL480722
EST:     GAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAG                         CTTCCACCGGAGTCCCAACAGCAGTTGCTTCTTCTGCCAGCGGATTTAACC
genomic: GAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAGgtaagttgga ... tccatcgaagCTTCCACCGGAGTCCCAACAGCAGTTGCTTCTTCTGCCAGCGGATTTAACC
EST: gi|13382160|gb|BG458835.1|BG458835
EST:     GAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAG                         CTTCCACCGGAGTCCCAACAGCAGTTGCTTCTTCTGCCAGCGGATTTAACC
genomic: GAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAGgtaagttgga ... tccatcgaagCTTCCACCGGAGTCCCAACAGCAGTTGCTTCTTCTGCCAGCGGATTTAACC
EST: gi|8383114|gb|BE055997.1|BE055997
EST:     GAATGACCTCTCTTCCAGAATTTCTTCCAGTTCTTCCTGTCATTCCTGAG                         CTTCCACCGGAGTCCCAACAGCAGTTGCTTCTTCTGCCAGCGGATTTAACC
genomic: GAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAGgtaagttgga ... tccatcgaagCTTCCACCGGAGTCCCAACAGCAGTTGCTTCTTCTGCCAGCGGATTTAACC
EST: gi|6020457|gb|AW065385.1|AW065385
EST:     GAATGACCTCTCTGCCAGAATT-CTTCCAGTTCTTTCTGTCATTCCTGAG                         CTTCCACCGGAG-CCCAAC
genomic: GAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAGgtaagttgga ... tccatcgaagCTTCCACCGGAGTCCCAAC
EST: gi|5762187|gb|AI967235.1|AI967235
EST:     GAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAG                         CTTCCACCGGAGTCCCAACAGCAGTTGCTTCTTCTGCCAGCGGATTTAACC
genomic: GAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAGgtaagttgga ... tccatcgaagCTTCCACCGGAGTCCCAACAGCAGTTGCTTCTTCTGCCAGCGGATTTAACC
EST: gi|71768064|gb|DR966001.1|DR966001
EST:     GAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAG                         CTTCCACCGGAGTCCCAACAGCAGTTGCTTCTTCTGCCAGCGGATTTAACC
genomic: GAATGACCTCTCTGCCAGAATTTCTTCCAGTTCTTTCTGTCATTCCTGAGgtaagttgga ... tccatcgaagCTTCCACCGGAGTCCCAACAGCAGTTGCTTCTTCTGCCAGCGGATTTAACC