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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGTTGGGAACTCTAAATTCTTTGGTTGTCACATATGGTGGTCAGATTGGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAGgtttttccttgtagtattcttccttctgcatatgcccttgccatgactagtgatgctgatttgtttttaatttgtggtag

Basic information

species Zea mays
transcript GRMZM2G168629_T05
intron # 19
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18383962|gb|BM417162.1|BM417162
EST:     GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAG                         TGACATGGATTTGCATATGACCGCTCTT
genomic: GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAGgtttttcctt ... tttgtggtagTGACATGGATTTGCATATGACCGCTCTT
EST: gi|22489194|gb|BU049130.1|BU049130
EST:     GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAG                         TGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCACAAT
genomic: GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAGgtttttcctt ... tttgtggtagTGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCACAAT
EST: gi|32868683|gb|CF008365.1|CF008365
EST:     GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCTTCTTTCATAAG                         TGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCACAAT
genomic: GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAGgtttttcctt ... tttgtggtagTGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCACAAT
EST: gi|87298767|gb|DY470770.1|DY470770
EST:     GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAG                         TGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCACAAT
genomic: GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAGgtttttcctt ... tttgtggtagTGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCACAAT
EST: gi|71448044|gb|DR829094.1|DR829094
EST:     GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAG                         TGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCACAAT
genomic: GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAGgtttttcctt ... tttgtggtagTGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCACAAT
EST: gi|31364294|gb|CD448649.1|CD448649
EST:     GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAG                         CGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCACAAT
genomic: GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAGgtttttcctt ... tttgtggtagTGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCACAAT
EST: gi|71448043|gb|DR829093.1|DR829093
EST:     GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAG                         TGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCACAAT
genomic: GGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTTCAACCCTCATAAGgtttttcctt ... tttgtggtagTGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCACAAT