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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGTAGTTATATCTCATACTGGAGAAGCTAGAAAAGGATCTGAAATTCGCACCTTCGATGGCTCACCAGTTGGCTATGCTTCATCCCCTATAGAAACAgtaaatttctgaagttttttttttaaaaactgtacgtattaaatcgtcaaagctcacactctggaagagcataatatgttttctgattaggatggccataattgaattacttttttttccttatttactctgctaaaaaaatcagttactgatacattttcatgaatttcag

Basic information

species Zea mays
transcript GRMZM2G158043_T03
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158043_T01 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os04g08270.1 (Oryza sativa), 5'ss of exon 10
CTATGTAGTTATATCTCATACTGGAGAAGCTAGAAAAGGATCTGAAATTCGCACCTTCGATGGCTCACCAGTTGGCTATGCTTCATCCCCTATAGAAACAgtaaatttctgaagttttttttttaaaaactgtacgtattaaatcgtcaaagctcacactc--tggaagagcataatatgttttc-tgattaggatggccata-attgaattacttttttttccttat-ttactctgctaaaaa--------aatcagttactg--atacattttcatgaattt--cag
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TTATGTACTAAGAACTCATACTGGAGAAGCTAAGAAGGGATCAGACATTTACACTTTTGATGGATCACCAGTTGGCTATACTTCATCCCCTGTAGAAACTgtatgttttt----ttcttaaaaaacagaatggtcggtacttattacaagtatttattctcacaagtgcagcataataggttttcataattgcattttttctgtgcataaggattttttcttttttgtatcacttcttcaaagtctactgtcaaccatcttctataatacactcttgtgtgtttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18648749|gb|BM497568.1|BM497568
EST:     GCTTCATCCCCTATAGAAACA                         ATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGT
genomic: GCTTCATCCCCTATAGAAACAgtaaatttct ... tgaatttcagATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGT
EST: gi|18450794|gb|BM429072.1|BM429072
EST:     CGATGGCTCACCAGTTGGCTATGCTTCATCCCCTATAGAAACA                         ATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGT
genomic: CGATGGCTCACCAGTTGGCTATGCTTCATCCCCTATAGAAACAgtaaatttct ... tgaatttcagATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGT
EST: gi|87152540|gb|DY397329.1|DY397329
EST:     GCACCTTCGATGGCTCACCAGTTGGCTATGCTTCATCCCCTATAGAAACA                         ATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGT
genomic: GCACCTTCGATGGCTCACCAGTTGGCTATGCTTCATCCCCTATAGAAACAgtaaatttct ... tgaatttcagATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGT
EST: gi|18648748|gb|BM497567.1|BM497567
EST:     GCACCTTCGATGGCTCACCAGTTGGCTATGCTTCATCCCCTATAGAAACA                         ATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGT
genomic: GCACCTTCGATGGCTCACCAGTTGGCTATGCTTCATCCCCTATAGAAACAgtaaatttct ... tgaatttcagATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGT
EST: gi|60396203|gb|DN229072.1|DN229072
EST:     GCACCTTCGATGGCTCACCAGTTGGCTATGCTTCATCCCCTATAGAAACA                         ATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGT
genomic: GCACCTTCGATGGCTCACCAGTTGGCTATGCTTCATCCCCTATAGAAACAgtaaatttct ... tgaatttcagATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGT
EST: gi|31360398|gb|CD444755.1|CD444755
EST:     GCACCTTCGATGGCTCACCAGTTGGCTATGCTTCATCCCCTATAGAAACA                         ATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGT
genomic: GCACCTTCGATGGCTCACCAGTTGGCTATGCTTCATCCCCTATAGAAACAgtaaatttct ... tgaatttcagATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGT