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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGTACGTTCACTTGAGCGTCTTCTGCAGTATGGCGAGCAGAATATAAGACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggataaatttatcttgtacactaataaatctctgatacgtgagatctactggatacatttttgatgagtgtagtttaagaacttcaggtttcaa...

Basic information

species Zea mays
transcript GRMZM2G155384_T03
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os02g05340.1 (Oryza sativa), 5'ss of exon 19
GGCTGTACGTTCACTTGAGCGTCTTCTGCAGTATGGCGAGCAGAATATAAGACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgta-actggataaatttatcttgtacactaataaatctc-tgatacgtgagatctactggatacatttttgatgagtgtagtttaagaacttcaggtttcaa---
||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||  |   ||      | | |      |  |||   ||  |||    |  |  |      ||    |||||||| |  ||| ||| ||    |   ||  |   
GGCTGTACGGTCACTTGAGCGTCTTTTACAGTATGGCGAGCAGAATATTAGACGGGCAGTTCCTCTTGCTCTTGGCATACTCTGCATATCTAATCCGAAGgtatgcaacatttgaccaacataagttttgttaaggatcacgatctaagttaaatttgaagtaatgctttgatgatta-agtgtaaaaa----aaactttgagag

upper sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 19
lower sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 19
GGCTGTACGTTCACTTGAGCGTCTTCTGCAGTATGGCGAGCAGAATATAAGACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaac-tggataaatttatcttgtacactaataaatctctgatacg-----tgagatctactggatacatt--tttgat----gagtgtagtttaagaacttcaggtttcaa------------------------------------------------
|||  | || ||| | || | |||||| || ||||| |||||||||||  | || ||||||||| | || |||||| ||||||| ||||| ||||| |||||||  ||||     ||  | || |    |  |  | |    |        |||    |     | |||||   ||| |     |   |   |||      |  || | |||                                                
GGCGATTCGATCATTAGAACATCTTCTACAATATGGAGAGCAGAATATTCGCCGAGCAGTTCCTTTGGCACTTGGTCTACTCTGTATATCAAATCCAAAGgtaaaatggacttgctt-ccctgcatttcatgacttttgcagtgttattattgaacagtgtgaaacacattaccttgctctgaaaagatgacttatagttgtagggctgcaactgcaagatgtcaccaacttttgctaactttttactaaatcattctag

upper sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 19
lower sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 19
GGCTGTACGTTCACTTGAGCGTCTTCTGCAGTATGGCGAGCAGAATATAAGACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaac-tggataaattt------atcttgtacact--aataaatctctgat------acgtgagatctactggatacatttttgatga--gtgtagtttaagaacttcaggtttcaa-----------------------------------
|||  | || ||| | || | |||||| || ||||| |||||||||||  | || ||||||||| | || |||||| ||||||| ||||| ||||| |||||||  ||||     ||      || ||   ||||     |   || | ||        |||| |   | |   |   | ||  | ||     |||||  ||  || || | | | |                                   
GGCAATTCGATCATTAGAACATCTTCTACAATATGGAGAGCAGAATATTCGCCGAGCAGTTCCTTTGGCCCTTGGTCTACTCTGTATATCAAATCCAAAGgtaaaatggacttgcttccctgcatttttatcactttggcagtgctatcattgaacagtgtgaaacacattaccttgctcttaaaagatgacatagttgtagggctgcaagatgccactaacttttgctaacttttctctgaataattacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32850124|gb|CD989805.1|CD989805
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|18659836|gb|BM500547.1|BM500547
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCA
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCA