Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGTACGTTCACTTGAGCGTCTTCTGCAGTATGGCGAGCAGAATATAAGACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggataaatttatcttgtacactaataaatctctgatacgtgagatctactggatacatttttgatgagtgtagtttaagaacttcaggtttcaa...

Basic information

species Zea mays
transcript GRMZM2G155384_T02
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os02g05340.1 (Oryza sativa), 5'ss of exon 19
GGCTGTACGTTCACTTGAGCGTCTTCTGCAGTATGGCGAGCAGAATATAAGACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgta-actggataaatttatcttgtacactaataaatctc-tgatacgtgagatctactggatacatttttgatgagtgtagtttaagaacttcaggtttcaa---
||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||  |   ||      | | |      |  |||   ||  |||    |  |  |      ||    |||||||| |  ||| ||| ||    |   ||  |   
GGCTGTACGGTCACTTGAGCGTCTTTTACAGTATGGCGAGCAGAATATTAGACGGGCAGTTCCTCTTGCTCTTGGCATACTCTGCATATCTAATCCGAAGgtatgcaacatttgaccaacataagttttgttaaggatcacgatctaagttaaatttgaagtaatgctttgatgatta-agtgtaaaaa----aaactttgagag

upper sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 19
lower sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 19
GGCTGTACGTTCACTTGAGCGTCTTCTGCAGTATGGCGAGCAGAATATAAGACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaac-tggataaatttatcttgtacactaataaatctctgatacg-----tgagatctactggatacatt--tttgat----gagtgtagtttaagaacttcaggtttcaa------------------------------------------------
|||  | || ||| | || | |||||| || ||||| |||||||||||  | || ||||||||| | || |||||| ||||||| ||||| ||||| |||||||  ||||     ||  | || |    |  |  | |    |        |||    |     | |||||   ||| |     |   |   |||      |  || | |||                                                
GGCGATTCGATCATTAGAACATCTTCTACAATATGGAGAGCAGAATATTCGCCGAGCAGTTCCTTTGGCACTTGGTCTACTCTGTATATCAAATCCAAAGgtaaaatggacttgctt-ccctgcatttcatgacttttgcagtgttattattgaacagtgtgaaacacattaccttgctctgaaaagatgacttatagttgtagggctgcaactgcaagatgtcaccaacttttgctaactttttactaaatcattctag

upper sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 19
lower sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 19
GGCTGTACGTTCACTTGAGCGTCTTCTGCAGTATGGCGAGCAGAATATAAGACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaac-tggataaattt------atcttgtacact--aataaatctctgat------acgtgagatctactggatacatttttgatga--gtgtagtttaagaacttcaggtttcaa-----------------------------------
|||  | || ||| | || | |||||| || ||||| |||||||||||  | || ||||||||| | || |||||| ||||||| ||||| ||||| |||||||  ||||     ||      || ||   ||||     |   || | ||        |||| |   | |   |   | ||  | ||     |||||  ||  || || | | | |                                   
GGCAATTCGATCATTAGAACATCTTCTACAATATGGAGAGCAGAATATTCGCCGAGCAGTTCCTTTGGCCCTTGGTCTACTCTGTATATCAAATCCAAAGgtaaaatggacttgcttccctgcatttttatcactttggcagtgctatcattgaacagtgtgaaacacattaccttgctcttaaaagatgacatagttgtagggctgcaagatgccactaacttttgctaacttttctctgaataattacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32925632|gb|CF030444.1|CF030444
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|32925375|gb|CF030187.1|CF030187
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|32926108|gb|CF030920.1|CF030920
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|32928954|gb|CF033766.1|CF033766
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGGCGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|32925553|gb|CF030365.1|CF030365
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|18384394|gb|BM417593.1|BM417593
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|32928817|gb|CF033629.1|CF033629
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCGGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|18659836|gb|BM500547.1|BM500547
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCA
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCA
EST: gi|32929670|gb|CF034482.1|CF034482
EST:     GACGGGCAGGTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGGTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|6021421|gb|AW066349.1|AW066349
EST:     GACGGGCAGTCCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTGAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|32925086|gb|CF029898.1|CF029898
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|32925292|gb|CF030104.1|CF030104
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCGAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|32849654|gb|CD989335.1|CD989335
EST:     CATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: CATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|32908274|gb|CF013087.1|CF013087
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|211100368|gb|FL070846.1|FL070846
EST:     CTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: CTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|32841969|gb|CD981650.1|CD981650
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|32926755|gb|CF031567.1|CF031567
EST:     GACGGGCAGGTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGGTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|211100372|gb|FL070850.1|FL070850
EST:     CTAATCCCAAG                         GTAAACGTTATGGACACACTGAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: CTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
EST: gi|32926620|gb|CF031432.1|CF031432
EST:     GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAG                         GTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT
genomic: GACGGGCAGTTCCTCTTGCTCTTGGTATACTCTGCATATCTAATCCCAAGgtaactggat ... gccttcacagGTAAACGTTATGGACACACTAAGCAGATTGAGTCATGATGCAGACGCCGAT