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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATTATCAGAGCCTGCTCTTTTGGCAAGCATCCAACAAGCAGGGATTTCTGTGAACAATAATCTGCTTTTTTCTTTGGTTGATATGTGGATCGACAAGgtacattgtttcttgcaaattgagcatctcgttctaaagattgagatacatggttctagtaggctcttttgatcccgtcatttgttatatttgtaacata...

Basic information

species Zea mays
transcript GRMZM2G151905_T03
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151905_T05 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os07g49260.1 (Oryza sativa), 5'ss of exon 19
ACTATTATCAGAGCCTGCTCTTTTGGCAAGCATCCAACAAGCAGGGATTTCTGTGAACAATAATCTGCTTTTTTCTTTGGTTGATATGTGGATCGACAAGgtacattgtttcttgcaaattgagcatctcgttctaaagattgagatacatggttctagtaggctcttttgatcccgtcatttgt-------tatatttgtaacata---
 ||||||||||||||||| ||| || ||||||| |||||| ||||||||||||| ||||||||||||||  | |||||||||||||||||||| ||||||||||||     | || |   |     | |   | | || | |   |       |   | |      ||||| ||| || ||  ||        || ||| |    ||   
GCTATTATCAGAGCCTGCCCTTCTGACAAGCATTCAACAAACAGGGATTTCTGTAAACAATAATCTGCTGCTCTCTTTGGTTGATATGTGGATTGACAAGgtacat-----cctgtagcatctctgtttttgttttaatactttaacctgcaatgtgaatg-----ttttggtcctgttatcagtaaagatacatgttttttgtttagat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37361410|gb|CF602699.1|CF602699
EST:     CTGTGAACAATAATCTGCTTTTTTCTTTGGTTGATATGTGGATCGACAAG                         GTAGATGACGCAAATGCTATACAGCAGAAGGAATACGCAATGGCACTTTCT
genomic: CTGTGAACAATAATCTGCTTTTTTCTTTGGTTGATATGTGGATCGACAAGgtacattgtt ... cattggacagGTAGATGACGCAAATGCTATACAGCAGAAGGAATACGCAATGGCACTTTCT
EST: gi|211283755|gb|FL354685.1|FL354685
EST:     CTGTGAACAATAATCTGCTTTTTTCTTTGGTTGATATGTGGATCGACAAG                         GTAGATGACGCAAATGCTATACAGCAGAAGGAATACGCAATGGCACTTTCT
genomic: CTGTGAACAATAATCTGCTTTTTTCTTTGGTTGATATGTGGATCGACAAGgtacattgtt ... cattggacagGTAGATGACGCAAATGCTATACAGCAGAAGGAATACGCAATGGCACTTTCT